Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H24
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 169 2e-43
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 167 1e-42
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 8e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 0.78
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 3.2
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 4.2
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 25 9.6
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.6
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 169 bits (412), Expect = 2e-43
Identities = 80/122 (65%), Positives = 93/122 (76%)
Frame = -2
Query: 546 TXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 367
T IAGRFTPG FTN I +REPRL++V DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 99 TAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNH 158
Query: 366 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 187
VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEA 218
Query: 186 AK 181
K
Sbjct: 219 KK 220
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 167 bits (405), Expect = 1e-42
Identities = 79/120 (65%), Positives = 92/120 (76%)
Frame = -2
Query: 546 TXIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRF 367
T IAGRFTPG FTN I +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 100 TAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNH 159
Query: 366 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 187
VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 8e-05
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -2
Query: 480 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 301
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 300 AR 295
+R
Sbjct: 240 SR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 0.78
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 432 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 322
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 324 IGLMWWLLAREVLRLRGVLPRDQRWD 247
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 269 FPVTSAGML--WLICSSTVTLKKVKRM 195
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 492 AFREPRLLIVLDPAQDHQPITEASY 418
A R+ RLL+++ P H P+ Y
Sbjct: 62 AGRDDRLLLIVGPCSLHDPVAAKEY 86
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -2
Query: 396 LCNTDSPLRFVD--IAIPCNTKSSHSI-GLMWWLLAREVLRLRGVLPRDQRWDV 244
L D ++ D +A N HS+ G +W+ A EV+ L G W V
Sbjct: 138 LTTKDGTIKLADFGVATKINALEDHSVVGSPYWM-APEVIELVGATTASDIWSV 190
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 458 TLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTLLV 318
+L+K + PLL + F LL + +TP DL+T L P +LL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,172
Number of Sequences: 5004
Number of extensions: 42581
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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