Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H24
(547 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 169 2e-42
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 166 1e-41
06_03_0543 + 21967787-21970261 29 3.2
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 5.6
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 27 7.4
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731... 27 9.8
05_07_0129 - 27886738-27886767,27887043-27887312,27888407-278884... 27 9.8
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 27 9.8
04_04_0907 + 29304830-29305030,29305296-29305547 27 9.8
03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045... 27 9.8
01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977 27 9.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 169 bits (410), Expect = 2e-42
Identities = 74/122 (60%), Positives = 95/122 (77%)
Frame = -2
Query: 540 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 361
IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 360 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 181
I IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A
Sbjct: 163 IGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAP 222
Query: 180 EQ 175
Q
Sbjct: 223 AQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 166 bits (403), Expect = 1e-41
Identities = 72/118 (61%), Positives = 92/118 (77%)
Frame = -2
Query: 540 IAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 361
IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VD
Sbjct: 103 IAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVD 162
Query: 360 IAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 187
I IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 163 IGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 318 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 229
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 217 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 333
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 301 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQS 399
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>12_01_0798 +
7314885-7314953,7315324-7315387,7315489-7315677,
7316430-7316625,7316727-7316953,7317177-7318134,
7320104-7321307,7321517-7321876,7321965-7323195,
7323334-7323599,7323738-7326335
Length = 2453
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +2
Query: 332 EDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVMG*WSCAGSNTIKRRGSRNAAWIWLV 511
ED L+ I + S E + ITG V+ S G + +K R +RN+A W
Sbjct: 4 EDEALYEIRRLASGSHEILREGEITGTSGAAGGVLSYLSLQGVSKLKERWTRNSALGWSK 63
Query: 512 KAPGVKRPAIXV 547
K + + V
Sbjct: 64 KRSRINAALLFV 75
>05_07_0129 -
27886738-27886767,27887043-27887312,27888407-27888482,
27889148-27889962
Length = 396
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 326 EWEDLVLHGIAMSTNLSGESVLHKAITG 409
EW++L+L G A+++ SGE L A G
Sbjct: 72 EWDELLLSGAALASESSGELQLVAASPG 99
>04_04_1331 -
32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 243 VVDLFFYRDPEESEK 199
++D+F+YRDP E EK
Sbjct: 721 MLDVFYYRDPNEMEK 735
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 456 PAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAIPCNT 340
P D + E A+ NIP+I L + D P +IA C T
Sbjct: 23 PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
>03_02_0766 -
11003746-11003902,11004037-11004281,11004379-11004585,
11004699-11004861,11005105-11005370
Length = 345
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 198 PFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLH 296
PF F++G+G+ H SA A A T+H
Sbjct: 99 PFIFVRGNGKGRTSINHESASSHNAESAAFTVH 131
>01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977
Length = 445
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 210 LQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSNQ 323
L GHG T +P+AG +H+ + LH+PTT +S+Q
Sbjct: 363 LVGHG--TPSYINPAAG---SHNYSQFLHLPTTPSSHQ 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,999
Number of Sequences: 37544
Number of extensions: 301812
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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