Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H21
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1396 - 26742694-26742915,26743736-26743771 72 2e-13
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 49 2e-06
11_01_0184 - 1444246-1444434,1446291-1446719 47 8e-06
02_05_0323 - 27928385-27928534,27930326-27930430 45 3e-05
12_02_0836 + 23550376-23550470,23551617-23551803 36 0.014
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 29 1.6
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 28 3.8
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 28 3.8
12_02_1259 - 27382639-27384284,27386570-27386612 28 5.0
06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514 28 5.0
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 28 5.0
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 5.0
01_06_1306 + 36151907-36154369 27 8.8
>08_02_1396 - 26742694-26742915,26743736-26743771
Length = 85
Score = 72.1 bits (169), Expect = 2e-13
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = -1
Query: 475 ADSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIEK-PGAKLDSRTETCITNCVERFIDT 299
ADS L L QE+QKA + + S CWDKCI PG+K S TC+TNC +RF+D
Sbjct: 15 ADSYLNITLQQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDM 74
Query: 298 SLLITNRF 275
S++I RF
Sbjct: 75 SVIIAKRF 82
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -1
Query: 475 ADSELQDFLIQEKQKAQFQAQIHEFNSFCWDKCIE-KPGAKLDSRTETCITNCVERFIDT 299
++ LQ L +EK+KA + + CWDKCI G+ + +C++NC +RF++
Sbjct: 7 SNPRLQAMLEEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLEL 66
Query: 298 SLLITNR 278
+L R
Sbjct: 67 KMLTMQR 73
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -1
Query: 445 QEKQKAQFQAQIHEFNSFCWDKCIE-KPGAKLDSRTETCITNCVERFIDTSLLITNR 278
+EK+KA + + CWDKCI G+ + +C++NC +RF + +LI R
Sbjct: 144 EEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQR 200
>02_05_0323 - 27928385-27928534,27930326-27930430
Length = 84
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = -1
Query: 493 FPSPKGADSELQDFLIQEK-QKAQFQAQ--IHEFNSFCWDKCIEKPGAKLDSRTETCITN 323
F S G+ + + Q K Q AQ AQ + + C+ KC+ KPG+ L +CI+
Sbjct: 4 FSSSSGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSCISR 63
Query: 322 CVERFIDTSLLIT 284
CV+R+I+ + +++
Sbjct: 64 CVDRYIEATGIVS 76
>12_02_0836 + 23550376-23550470,23551617-23551803
Length = 93
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -1
Query: 427 QFQAQIHEFNSF---CWDKCIEKPGAK-LDSRTETCITNCVERFIDTSLLITNRFAQM 266
Q + + +NS C+ C++ K LD + E+C+ C E+F+ S+ + RFA++
Sbjct: 28 QIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAEL 85
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 104 YYYTTTVKQSIVNSNLLIYFYTNINLKFSL 193
YY K SI+ SNL Y Y I+ K+S+
Sbjct: 1002 YYKKALTKGSILRSNLSTYLYKRISKKYSI 1031
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 442 EKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTETCIT 326
+ K Q+Q Q+ EF S CW+ + + S +E+ +T
Sbjct: 301 DNNKVQYQYQLGEFMSSCWEPVMRQEPQDACSDSESDLT 339
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 442 EKQKAQFQAQIHEFNSFCWDKCIEKPGAKLDSRTETCIT 326
+ K Q+Q Q+ EF S CW+ + + S +E+ +T
Sbjct: 1348 DNNKVQYQYQLGEFMSSCWEPVMRQEPQDACSDSESDLT 1386
>12_02_1259 - 27382639-27384284,27386570-27386612
Length = 562
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 101 NYYYTTTVKQSIVNSNLLIYFYTNINLKFSL 193
N+YY T +V++ L+IY +NIN L
Sbjct: 167 NWYYFTFTIAMMVSATLIIYLQSNINWAIGL 197
>06_03_1498 + 30589634-30589750,30590441-30590577,30590797-30591514
Length = 323
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 234 THQCIPPPFSSICANLFVINSEVSMNLSTQFVIHV-SVRESSLAPGFS 374
T +P P SSI N+ N E S+ + F+ SVR+S P F+
Sbjct: 233 TKSLLPRPISSIRQNMDTSNPESSLKSNGSFLSGFRSVRKSPSTPNFA 280
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 391 CWDKCIEKPGAKLDSRTETCIT 326
C+ KC+ KPG L +CI+
Sbjct: 97 CFAKCVTKPGTSLSGSESSCIS 118
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 104 YYYTTTVKQSIVNSNLLIYFYTNINLKFSL 193
YY K SI+ SNL Y Y I+ K+S+
Sbjct: 1007 YYKKALPKGSILRSNLSTYLYKPISKKYSI 1036
>01_06_1306 + 36151907-36154369
Length = 820
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 487 SPKGA--DSELQDFLIQEKQKAQFQAQIHEFNSFCWDK 380
SP G D L DF++Q +Q QF+ E + F D+
Sbjct: 270 SPAGVLPDVSLNDFVVQNQQALQFRRGFQEASKFLPDE 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,574,102
Number of Sequences: 37544
Number of extensions: 203751
Number of successful extensions: 456
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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