Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H20
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 30 1.7
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 30 1.7
03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512 29 2.3
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 29 3.0
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 29 3.0
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 29 3.0
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 29 3.0
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 29 4.0
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 28 5.2
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 28 5.2
10_08_0423 + 17801221-17801416,17802239-17803212 28 6.9
04_04_0038 - 22312479-22313282 27 9.2
01_06_1397 - 37017468-37017561,37017763-37017836,37019128-370191... 27 9.2
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 388 MIFTEVKPVWMDLSVITQKRTSWNSLRNY 302
+I T + P+ D SV+ + R +W LR+Y
Sbjct: 247 IILTRINPLIRDTSVLVRLRPAWEDLRSY 275
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 388 MIFTEVKPVWMDLSVITQKRTSWNSLRNY 302
+I T + P+ D SV+ + R +W LR+Y
Sbjct: 239 IILTRINPLIRDTSVLVRLRPAWEDLRSY 267
>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
Length = 957
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 320 PACPLLCDHRKVHPNGLDLCKNHRRPSCLRDMFE 421
P C +LCD + L C+ HRR + DM E
Sbjct: 84 PLCRVLCDSHAAEVSRLGYCRAHRRLADAGDMCE 117
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 596 SGGLGIPPGSVXVSSWXLNGYLEKSYDI 513
SGG+G+ GS+ + +W G L +S I
Sbjct: 100 SGGVGLIAGSIRLGAWVAGGVLSRSLSI 127
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 383 FYRGQARLDGPFCDHTEEDKLEFLEKLSEMGVRNIEMEAPAFAALTK 243
FYR + + GPF D T+ + L+ LEK + + I + P F A T+
Sbjct: 2761 FYRLSSAVGGPFMDSTKPENLD-LEKFVKWLIDEINISKP-FPAKTR 2805
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 469 KD*VRKYILWHLRRMSFKHISEARWAPMIFTEVKPVWMDLSVITQKRTSWNS 314
KD +R+ L+++R ++ RWAP+ F K W L T + NS
Sbjct: 693 KDFIRRNNLYNVRYFQLMWVTRKRWAPVYF---KSNWCPLIQTTARSEGTNS 741
>01_01_0558 +
4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = -3
Query: 590 GLGIPPGSVXVSSWXLNGYLEKSYDIPVMGRSLK--LPAILDKRLSQEIYSMASEED--- 426
G+G+PP V++ GY + + D ++G ++ + I DK LS ++ A +
Sbjct: 167 GMGLPPAPWAVAAAAAAGYRQPAMDSGIIGSTIGIFMQVIFDKYLSSKLEQWADRANLGG 226
Query: 425 EFQ 417
EFQ
Sbjct: 227 EFQ 229
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -3
Query: 491 KLPAILDKRLSQEIYSMASEEDEFQTYLGGTMGADD 384
KL A DKR+SQE+ A E EF+ Y+ MG D
Sbjct: 23 KLRAFFDKRISQEVSGDALGE-EFKGYVFKIMGGCD 57
>08_02_0193 -
14073103-14073246,14073332-14073481,14073571-14073640,
14073900-14074021,14074260-14074395,14074492-14074967
Length = 365
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +2
Query: 200 LLE*HKRSPLVCRLLLLTPQKRAPPSLYSSHPFLIISQGIPACPLLCDHRKVHP 361
LL H+R+PL L L+P P P + P P LC R+ P
Sbjct: 12 LLRRHRRAPLPLLLSALSPPPPTTPESCPDGPSPVAPYFAPPPPPLCRRRRSWP 65
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -3
Query: 491 KLPAILDKRLSQEIYSMASEEDEFQTYLGGTMGADD 384
KL A DKR+SQE+ A E EF+ Y+ MG D
Sbjct: 23 KLRAFYDKRISQEVSGDALGE-EFKGYVFKIMGGCD 57
>10_08_0423 + 17801221-17801416,17802239-17803212
Length = 389
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 600 HXGGARYTTRFRXCIELGPQRIFGEELRYSGYGSIIKATRYF 475
H GG R C+EL P+++ YG++ T ++
Sbjct: 309 HPGGPAILNRLEVCLELQPEKLKISRKALMNYGNVSSNTVFY 350
>04_04_0038 - 22312479-22313282
Length = 267
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = +2
Query: 260 KRAPPSLYSSHP----FLIISQGIPAC-PLLCDHRKVHPNGLDLCKN---HRRPSC 403
KRA S+ HP L+ S C P +CD + H N L+ KN +P+C
Sbjct: 48 KRATCSICLEHPHKAVLLLCSSHSKGCRPYMCDTNRQHSNCLEQFKNAYSRGKPAC 103
>01_06_1397 -
37017468-37017561,37017763-37017836,37019128-37019193,
37019543-37019623,37019735-37019943,37020096-37020192,
37020497-37020514,37020597-37020727,37021040-37021088,
37021450-37021539,37021616-37021721,37021815-37021885,
37021963-37022037,37022059-37022120,37022677-37022887,
37023599-37024069,37024387-37024719
Length = 745
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 385 IFTEVKPVWMDLSVITQKRTSWNSLRNY 302
I T + P D SV + R +W LR+Y
Sbjct: 261 ILTRINPEVRDTSVFVKLRPAWEDLRSY 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,154,794
Number of Sequences: 37544
Number of extensions: 363714
Number of successful extensions: 920
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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