Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H18
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    30   0.23 
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.5  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   8.5  

>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 570 KYKNKEDSQAVINNIVNDYNKEQSVSFSG 484
           KYK   + QA I N+VN +NK +  +F G
Sbjct: 548 KYKEVHEKQAAIANMVNTFNKPKRNAFIG 576


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 351 TEQLSDSPVEIPASVGSFGTQTVAVNQ 271
           TE +SDS  ++P++  + GT+ ++ N+
Sbjct: 83  TEYISDSTTDLPSAAMARGTRQLSYNE 109


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 564 KNKEDSQAVINNIVNDYNKEQSVSFSGLDDSPQNV 460
           K K DSQ   ++ VN+ + +  +S +G+D   +N+
Sbjct: 397 KKKFDSQKPDDDSVNEISSDLGLSTTGIDRVEENI 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,462
Number of Sequences: 5004
Number of extensions: 37932
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)