Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H18
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0180 + 15367737-15367755,15368874-15369739                       30   1.2  
05_03_0033 - 7585267-7586028                                           30   1.2  
05_03_0040 - 7646525-7647775                                           29   2.8  
05_03_0035 - 7592177-7592938                                           29   2.8  
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    29   2.8  
02_01_0286 + 1921049-1921726                                           29   2.8  
08_02_0937 + 22801526-22802461                                         29   3.7  
11_06_0610 - 25449085-25453284                                         28   6.5  

>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 380 DDTPKTPREPDPKLEPESSMV*APDPK 460
           D  PK   EPDP+LEPE      P+P+
Sbjct: 150 DPEPKPDPEPDPELEPEPEPEPDPEPE 176


>05_03_0033 - 7585267-7586028
          Length = 253

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 389 PKTPREPDPKLEPESSMV*APDPKTFCGESSSPEKDT 499
           PK   +P+PK EP+S     P P+      S PE ++
Sbjct: 185 PKAESQPEPKTEPKSESKAEPKPERKSYSKSKPEPES 221


>05_03_0040 - 7646525-7647775
          Length = 416

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 389 PKTPREPDPKLEPESSMV*APDPKTFCGESSSPE 490
           PK   +P+PK EPE   V  P+PK        PE
Sbjct: 66  PKPTPKPEPKPEPEPKPVPEPEPKPEPKPEPKPE 99


>05_03_0035 - 7592177-7592938
          Length = 253

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 389 PKTPREPDPKLEPESSMV*APDPKTFCGESSSPEKDT 499
           P+   +P+PK EP+S     P P+      S PE ++
Sbjct: 185 PRAESQPEPKTEPKSESKAEPKPERKSYSKSKPEPES 221



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 359 PSGIGEGDDTPKTPREP--DPKLEPESSMV*APDPKTFCGESSSPE 490
           P    E    PK   EP  +PK EP+S     P+P+T     S P+
Sbjct: 127 PEAKSEPKSEPKPKSEPYAEPKSEPKSEPQSEPNPETKAEPKSEPK 172


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 488 PGLTIHHKTSLGLELRPYLTLVLTSDPV 405
           P L +H + ++ LE   Y+TL  +SDP+
Sbjct: 564 PTLIVHERVTIRLESESYVTLQWSSDPI 591


>02_01_0286 + 1921049-1921726
          Length = 225

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +1

Query: 94  IVQQETRGRGANCTAATDSRAAFRYAGHGRDA*NRGVTENARVRKA*RRMSAK*IRTRRL 273
           + ++  RGRG  C A      A R+ G   +A   G       R   R  +A   R RRL
Sbjct: 119 VKRRRRRGRGCTCEAEDGDGTAGRHTGEAAEAAGGGRRHRIETRATGRGGAATGRRGRRL 178

Query: 274 INSN 285
              N
Sbjct: 179 KREN 182


>08_02_0937 + 22801526-22802461
          Length = 311

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 356 CPSGIGE--GDDTPKTPREPDPKLEPESSMV*APDPKTFCGESSSPEKD 496
           CP   GE   ++ P  P EP+ + E  S     P P  F  +SSS +++
Sbjct: 45  CPRCRGEFLEEENPNPPPEPEEEEEVSSPPPPPPPPPGFLSDSSSDDEE 93


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 305 PTEAGISTGESDSCSV*CPSGIGEGDDTPKT--PREPDPKLEPESSMV*APDPKTFCGES 478
           PTE    T ES+S S   P+  G     PK+  P E  P   PES    +P P    G +
Sbjct: 679 PTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPP-TPESEAS-SPPPPAPEGHT 736

Query: 479 SSPEKDT 499
            SP K +
Sbjct: 737 PSPPKSS 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,346
Number of Sequences: 37544
Number of extensions: 266366
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)