Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H18
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    25   0.43 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.3  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 362 SGIGEGDDTPKTPREPDPKLEPES 433
           SG+  G  TP T RE DP   P S
Sbjct: 387 SGLVSGSSTPGTGREHDPAKFPPS 410


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 408  RIRS*NQSQVWSELQTQRRFVVNRQARKKIQT 503
            +++S  QSQ   + Q Q+  V N+  +  +QT
Sbjct: 971  KVQSQQQSQQSQQQQQQQTIVTNQAGKSILQT 1002


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 110  LEGVELTVPLPLIAVLLSGTL 172
            +E + ++  LPL+A  LSG L
Sbjct: 986  IESIMVSDYLPLVAATLSGVL 1006


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 570 KYKNKEDSQAVINNIVNDYNKE 505
           KY N  +     NN  N+YNK+
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKK 344


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 115 GRGANCTAATDSRAAFR 165
           G GA C A TDS  A +
Sbjct: 419 GFGAYCAAHTDSSGAMK 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,048
Number of Sequences: 438
Number of extensions: 2466
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)