Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H16
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 52 2e-08
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 39 1e-04
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 39 1e-04
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 39 1e-04
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 39 1e-04
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 39 1e-04
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 25 3.4
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 23 7.9
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 52.0 bits (119), Expect = 2e-08
Identities = 26/42 (61%), Positives = 28/42 (66%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQR 10
MLIKVKTLTGKEIE+DI+P D EGIPP QQR
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQR 42
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 121
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 197
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 273
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 349
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 39.1 bits (87), Expect = 1e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 3.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 185 ERLSIKLYTNYFFIFDHFSNRRAVRPYSD*HKCISSAG 298
E +S + +++F D+ S R +RP+ +K S+AG
Sbjct: 175 ESISNEFRESFYFGNDNLSKDRLLRPFQGPNKWPSTAG 212
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 299 GRPMRYTYVNRCRGAL 252
GRP+ YV+R RG L
Sbjct: 161 GRPLNSVYVDRVRGML 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,809
Number of Sequences: 5004
Number of extensions: 15103
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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