Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H16
(310 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 54 2e-08
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 39 6e-04
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 39 6e-04
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 39 6e-04
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 39 6e-04
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 39 6e-04
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 38 0.001
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 29 0.66
Z83119-3|CAB05581.1| 163|Caenorhabditis elegans Hypothetical pr... 27 2.7
AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein. 27 2.7
DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein. 26 6.2
DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-couple... 26 6.2
AF026211-1|AAB71293.2| 600|Caenorhabditis elegans Sodium:neurot... 26 6.2
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 54.0 bits (124), Expect = 2e-08
Identities = 28/45 (62%), Positives = 29/45 (64%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
MLIKVKTLTGKEIE+DIEP D EGIPP QQR F
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIF 45
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 45
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 45
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 121
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 197
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 273
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 349
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 501
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTL GK I +++E +D EGIPP QQR F
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 425
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 45
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 121
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 197
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 273
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 349
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 501
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 577
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 653
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 729
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 805
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTL GK I +++E +D EGIPP QQR F
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 425
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 45
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 121
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 197
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 273
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 349
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 425
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 501
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 577
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 653
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 729
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 805
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
M I VKTLTGK I +++E +D EGIPP QQR F
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIF 45
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = -2
Query: 138 KMLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIPPQQQRRXF 1
K+ + VKTL GK I I I+ TD G+PP QQR F
Sbjct: 160 KLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIF 205
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 29.1 bits (62), Expect = 0.66
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 135 MLIKVKTLTGKEIEIDIEPTDXXXXXXXXXXXXEGIP 25
M I VKTLTGK I +++E +D EGIP
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>Z83119-3|CAB05581.1| 163|Caenorhabditis elegans Hypothetical
protein R05H10.5 protein.
Length = 163
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 177 SPCYITINNYNSFKMLIKVKTLTGKEI 97
S C +T +NYN FK L+ V G E+
Sbjct: 34 SQCGLTNSNYNQFKELLDVYKKDGLEV 60
>AF074395-1|AAC26791.1| 365|Caenorhabditis elegans CET-1 protein.
Length = 365
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 91 RYRTHRQSGKNQRKSRRKGR 32
R + RQ+G ++RK+R+KGR
Sbjct: 233 RRKRSRQTGNSERKNRKKGR 252
>DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein.
Length = 600
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 73 VGGFYIYFNFFTSKRLDFNQHFKRVIIID 159
+ G+ IY+ FFT+K L + ++ + +D
Sbjct: 546 IPGYAIYYLFFTNKHLTLKERVRKGLNLD 574
>DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-coupled
betaine transporterprotein protein.
Length = 600
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 73 VGGFYIYFNFFTSKRLDFNQHFKRVIIID 159
+ G+ IY+ FFT+K L + ++ + +D
Sbjct: 546 IPGYAIYYLFFTNKHLTLKERVRKGLNLD 574
>AF026211-1|AAB71293.2| 600|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 3
protein.
Length = 600
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 73 VGGFYIYFNFFTSKRLDFNQHFKRVIIID 159
+ G+ IY+ FFT+K L + ++ + +D
Sbjct: 546 IPGYAIYYLFFTNKHLTLKERVRKGLNLD 574
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,460,747
Number of Sequences: 27780
Number of extensions: 82212
Number of successful extensions: 257
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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