Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H16
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   5.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   5.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   5.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   5.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 159 INNYNSFKMLIKVKTL 112
           I + N FK +IK+KT+
Sbjct: 827 ILDQNKFKDIIKIKTI 842


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 153 NYNSFKMLIKVKTLTGKEIE 94
           N+NS KM  + + LT KE++
Sbjct: 230 NHNSDKMSDQQENLTLKEVD 249


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 175 R*IRTTKYKIIYQLLFYFRPLF 240
           R + +  Y + Y +  YF PLF
Sbjct: 209 RGLLSASYLVCYGIWVYFVPLF 230


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 175 R*IRTTKYKIIYQLLFYFRPLF 240
           R + +  Y + Y +  YF PLF
Sbjct: 85  RGLLSASYLVCYGIWVYFVPLF 106


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 141 FKMLIKVKTLTGKEIEI 91
           +K ++K+K L GK+ +I
Sbjct: 439 YKKMLKIKRLFGKDRKI 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,470
Number of Sequences: 438
Number of extensions: 1062
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)