Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H15
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1151 - 31284094-31284204,31284375-31284434,31284518-312845... 30 1.7
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 30 1.7
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 29 2.9
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 28 6.7
09_04_0295 - 16454862-16455035,16455122-16455264,16455393-164559... 27 8.9
08_01_0917 + 9033451-9036136,9036373-9036722 27 8.9
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 27 8.9
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 27 8.9
>04_04_1151 -
31284094-31284204,31284375-31284434,31284518-31284595,
31284688-31284812,31284898-31285906,31286513-31286920,
31287323-31287400,31287524-31287934
Length = 759
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 469 QGAPRAGEVGFGSEGLGRATYTPNSFKFPIVSRIKYVLAV 588
QGAP AG+ G +G G+A TP+S P +R+ L V
Sbjct: 68 QGAPDAGD---GKDGGGKAAATPSSAAQPTTTRLLRELGV 104
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 518 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRD 372
P+ + PT+P+RGAP S ++ +W Q LS + +TA V D
Sbjct: 89 PKKAAAAPTTPSRGAPSASA-APVSSSWEQLKSLLSCR-SATAAARVHD 135
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 515 RPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQV 402
RPS P PT+PA G C + + S QKL V
Sbjct: 147 RPSSPAPTNPADGPRCDAATSSHRLLPSALQQKLEEHV 184
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 470 CRSTNEALAETWSQKNQKLS 411
CR+ E L ETWSQK+ +S
Sbjct: 3165 CRAQLEQLQETWSQKDMTIS 3184
>09_04_0295 -
16454862-16455035,16455122-16455264,16455393-16455939,
16456006-16456332
Length = 396
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 437 TSPPEPRSLIGRVRREQERLALAQKVLVEPLTPPIH 544
+SPP P L+ RV R E +ALA + L E +H
Sbjct: 219 SSPPPPPPLVDRVSRALE-IALAMRYLHEQTPAVVH 253
>08_01_0917 + 9033451-9036136,9036373-9036722
Length = 1011
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 385 YQYAMTSLY*CYIRFTYTLNNSFGYLTFINSQRVS 281
++ +TSL Y FT TL + G+LT INS VS
Sbjct: 394 WKLKLTSLNLSYNLFTGTLPHDIGWLTRINSIYVS 428
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1
Query: 587 TASTYLIRLTIGNLNELGV*VALPRPSEPKPT-SPARGAPC--RSTNEALAETWSQKNQK 417
T T + +T+G ++G+ + P P KP+ PA +P + N+ L +T NQ
Sbjct: 774 TVPTTVKSMTMGGQMQMGMPMFSPSPPSKKPSPPPATASPLIGKVDNDGLKKTNELLNQD 833
Query: 416 LS 411
+S
Sbjct: 834 IS 835
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = -1
Query: 608 KLLECXTTASTYLIRLTIGNLNELGV*VALPRPSEPKPTSPARGAPCRSTNEALAETWSQ 429
K+ + S+Y + + ++ +A R +P+PT P + A T
Sbjct: 475 KIADLEFRVSSYELNMQEEVARKVDERMAAHRSHDPQPTIPPAMVSPSGNRSSCASTGQV 534
Query: 428 KNQKL-SPQVRSTATLPVRDDVSLLMLHSIHVYFK 327
+Q + + Q + +T PV DD++ +H+ FK
Sbjct: 535 GSQSMDAMQTQDESTCPV-DDITQRTPCELHIPFK 568
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,429
Number of Sequences: 37544
Number of extensions: 228616
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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