Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H15
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-7|CAA96592.1|  140|Caenorhabditis elegans Hypothetical pr...    33   0.12 
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    30   1.5  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical p...    29   3.5  
AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    29   3.5  

>Z72502-7|CAA96592.1|  140|Caenorhabditis elegans Hypothetical
           protein C08B6.10 protein.
          Length = 140

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 521 LPRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRS 396
           +P P+ P P++P   AP R     +  TW+ + Q+   Q+ S
Sbjct: 27  IPSPANPTPSNPVTAAPIRRQPTVIQTTWAPQIQQPQQQLES 68


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 512 PSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLPVRDDVS 363
           P+  KP +P+RG P          T +  +   SPQ+  T TLP    V+
Sbjct: 250 PAAKKP-APSRGRPSNKRQTTTTTTTTITSVSKSPQISDTNTLPTLPSVT 298


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 518 PRPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRST 393
           P PS P PT PA  A  +S  +   E + Q +    P + ST
Sbjct: 346 PTPSTPLPTRPAAAAAQKSVKQ---EVYEQSSSSNCPSISST 384


>Z11505-10|CAA77588.2|  590|Caenorhabditis elegans Hypothetical
           protein F59B2.11 protein.
          Length = 590

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 463 DRQGAPRAGEVGFGSEGLGRATYT 534
           DR+   R+   GFGS G GRA YT
Sbjct: 468 DRKSDSRSTSKGFGSGGRGRAEYT 491


>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 374 DDVSLLMLHSIHVYFK*FIRLFNFH*FSTC-QPVFDDSYYVTTI 246
           DD  +++L+ +H+    F+R+ N   F +C Q  F D+ +  T+
Sbjct: 33  DDDPIILLNCVHLLVLHFVRICNISSFKSCFQTWFSDNCWSCTV 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,822
Number of Sequences: 27780
Number of extensions: 201773
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)