Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H14
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           28   1.6  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 282 KHCTPTTETCE--CQRVLIINKKHSLIAGYYQLDIK*FIRQ 398
           K C P  +  +  C  ++  NKKH   + Y+Q  +K F+++
Sbjct: 50  KQCAPLNDLTKQVCVELMQCNKKHLEASRYFQTHVKEFMKE 90


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 73  TRRCADFCTECGLTSRHETVSH 8
           T   A+FC+E  ++S HET S+
Sbjct: 138 TEEAAEFCSEKHISSAHETSSY 159


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 52  KNLHISLXKTSSISLVTQIHLKTHKFI 132
           KN +  L + S I +  + H+KTHK I
Sbjct: 47  KNCNRMLDRASDIGVTFRAHVKTHKTI 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,084
Number of Sequences: 5004
Number of extensions: 52563
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)