Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H12
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.3  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   5.7  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    26   5.7  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.5  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   7.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   7.5  

>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 204 PRYNIDGTYVNTTDSISNMTNLFNVYNIPPFYIELNN 314
           PRY +  + +    + SN+ NL ++Y +P  + +LN+
Sbjct: 241 PRYQLVLSRIYPYAAASNLRNLLSLYRLPNCFGKLNS 277


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = +1

Query: 412 GTHFYLNTKIDKDM*VPAQIIILVSPVINYKYEFTQNFH-----*IIKSHFCPVXXLFI 573
           G  FY  T +     +   I++LV+    Y Y  T   H      I   HFC V  LF+
Sbjct: 206 GASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFL 264


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 543 TFNNLMEILCKLILIINYW*NEYYNLCRY--LHVFVYFCIQ 427
           T NN M ++  + L+ N W NE+YN   +  +HV++  C +
Sbjct: 264 TINNAM-VVAPVTLLKN-WENEFYNWLGHERIHVYIARCAE 302


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 276 VYNIPPFYIELNNMLSILCFL 338
           V ++P F++++    SILCFL
Sbjct: 22  VISVPFFFLQMTPFYSILCFL 42


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 183 ELVNL*SPRYNIDGTYVNTTDSISNMTNLFNV 278
           EL+N      NI+ TY +  D+I+++ N F+V
Sbjct: 298 ELINALYTSRNIEKTYKHQADAINHLWNGFHV 329


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 387 TDF*TNFLIN*KSDVSARNKEYLAYYSI 304
           T F TNF+ N K+  +  + EYLA +SI
Sbjct: 223 TFFETNFIENTKNFYAKESSEYLASHSI 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,328
Number of Sequences: 5004
Number of extensions: 54870
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)