Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H12
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0479 - 29349154-29349657                                         30   1.5  
10_07_0108 - 12942031-12942048,12942167-12942357,12944659-12945307     29   4.5  
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011...    29   4.5  

>02_05_0479 - 29349154-29349657
          Length = 167

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 373 CLKVCNCCPTLSIGTHFYLNTKIDKDM*VPAQIIIL 480
           CL VC CCP L +    +L  ++ K + V ++ IIL
Sbjct: 3   CLVVCCCCPCLVLQITVFLFVRLPKKVVVKSKRIIL 38


>10_07_0108 - 12942031-12942048,12942167-12942357,12944659-12945307
          Length = 285

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 555 WAEVTFNNLMEILCKLI 505
           W++ +FNNLM +LC L+
Sbjct: 127 WSDTSFNNLMSLLCVLL 143


>04_03_0055 +
           10299539-10299703,10300042-10300746,10301025-10301116,
           10302896-10303313
          Length = 459

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +3

Query: 171 NVLPELVNL*SPRYNIDGTYVNTTDSIS---NMTNLFNVYNIPPFYIELNNMLSILCFLH 341
           +VLPE V+  +  + ID  +++  D+++     TN   +   PP  +   + L +LC LH
Sbjct: 282 DVLPEDVSK-NCIFMIDFIFISDVDNMNLPGGYTNDMFILGCPPLVLHATSPLRLLCTLH 340

Query: 342 *HQISS 359
             ++SS
Sbjct: 341 GPRLSS 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,667,741
Number of Sequences: 37544
Number of extensions: 287598
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)