Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H12
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical...    29   4.0  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z67735-3|CAA91531.3|  513|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical
           protein F46B3.2 protein.
          Length = 190

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 361 YQKICLKVCNCCP 399
           YQKIC K CN CP
Sbjct: 92  YQKICPKTCNVCP 104


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 361 YQKICLKVCNCCP 399
           YQKIC K CN CP
Sbjct: 77  YQKICPKTCNVCP 89


>AF016421-10|AAC25792.1|  473|Caenorhabditis elegans Hypothetical
           protein F44E7.7 protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +1

Query: 4   CFAKCVICTVYNGCGLHVVMY---LYASTSV--IIAQQIKNTSVASSI 132
           CF KCV+ T  + CG +V  Y   LY  T +  ++   +K T  A+++
Sbjct: 274 CFDKCVLATWLSMCGRNVAFYVLVLYGPTYLREVLHFDVKGTGWAAAL 321


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 213 NIDGTYVNTTDSISNMTNLFN 275
           N D  Y + TDS+S +TN+FN
Sbjct: 218 NTDVQYTSPTDSLSTVTNVFN 238


>Z67735-3|CAA91531.3|  513|Caenorhabditis elegans Hypothetical
           protein C15A7.2 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 196 KFTSSGNTFILTYKYRYMNFYLLN*LRMYF*SAEQLLPKLRHINTSQ 56
           +F    +T  L Y +RY  FY    L +YF + +Q     + +NT +
Sbjct: 44  RFCFQSDTGALEYTFRYPMFYPTQMLLLYFDTEDQWPRAYKELNTCE 90


>AL110482-6|CAB60339.1|  179|Caenorhabditis elegans Hypothetical
           protein Y39G8B.7 protein.
          Length = 179

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 316 C*VFFVSCTDIRFL-VYQKICLKVCNCCP 399
           C VF  +C D  ++ + +K C + CN CP
Sbjct: 78  CNVFKKNCNDPDYIPMLKKFCPETCNMCP 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,630,421
Number of Sequences: 27780
Number of extensions: 303410
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)