Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H10
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    30   1.1  
04_03_0974 + 21367304-21369634                                         27   7.5  

>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 66  YLTTVKCSKHCPXNVVGQHPLPLT---NNDLIPVSRRR 170
           YLTTVKCS       + +H +P+T    ++L P  RRR
Sbjct: 447 YLTTVKCSHPLHSGRIAKHDIPITILLFSNLPPSKRRR 484


>04_03_0974 + 21367304-21369634
          Length = 776

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 365 GWDRYVLSTFAARGAVPIPYKFNFYVIEKVKNSHSA 472
           GW R VLS+ +AR A   P   + Y      N  SA
Sbjct: 47  GWYRSVLSSASARDAAAAPAAEHLYTYSHAMNGFSA 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,062,346
Number of Sequences: 37544
Number of extensions: 230617
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)