Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H09
(694 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 2.4
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 2.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 2.4
Z81575-6|CAB04633.1| 344|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical pr... 28 5.5
U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical p... 28 7.3
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 27 9.6
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 4736 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 4776
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 4897 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVQ 4937
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 5253 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 5293
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 6179 LMECSEYVTTSIQKGSTAAPAHEPTVEKLAPVESKETSEVE 6219
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 4736 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 4776
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 4897 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVQ 4937
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 5253 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 5293
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 5414 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 5454
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 6199 LMECSEYVTTSIQKGSTAAPAHEPTVEKLAPVESKETSEVE 6239
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 4736 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 4776
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 4897 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVQ 4937
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 5253 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 5293
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 5414 LMECSEYVTTSIQKGSTAAPAQEPTVEKLAPVESKETSEVE 5454
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 378 ILRSNAFATTSVSKYSQVEPVSSPTRPDVAGIAS*TTSEIK 500
++ + + TTS+ K S P PT +A + S TSE++
Sbjct: 6199 LMECSEYVTTSIQKGSTAAPAHEPTVEKLAPVESKETSEVE 6239
>Z81575-6|CAB04633.1| 344|Caenorhabditis elegans Hypothetical
protein R08H2.7 protein.
Length = 344
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 625 SVQCIRKHYQHNSYQYACDNQVRMIPKLDF*KYLTVAN*KVFFIS 491
+V C K Y + S + CDN + + + F ++LT+ + VF++S
Sbjct: 180 NVPCPDKEYFNISLFFICDNPLMLTSLMGF-QFLTLTSQGVFYVS 223
>Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical
protein R05H5.6 protein.
Length = 337
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 231 LIFKLKCMYS*DILKFKYISGFSTLLIHFLWNIYCVLF 344
+IFKL+ D +KF YI F+ +LI L N CV+F
Sbjct: 38 IIFKLRVCTFNDNIKFLYIVYFTQILISVLNN--CVVF 73
>Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical
protein B0393.2 protein.
Length = 585
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 345 HAQKPKANRR*ILRSNAFATTSVSKYSQVEPVSSPTRPDVA 467
H + PK N + +++SN F+ +V+ S P RP A
Sbjct: 373 HYRNPKKNAKPMIKSNNFSHITVAGSSHPNRTQRPQRPPAA 413
>U28944-12|AAA68371.2| 363|Caenorhabditis elegans Hypothetical
protein C18A3.2 protein.
Length = 363
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 277 SNTSLDFLRC*FTFCGIFIASC 342
S TS+ FL C CG+FIA+C
Sbjct: 37 SKTSISFLGC--ASCGVFIATC 56
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 562 LDYHMHIDKSCVGNVYEYIER--CDCVGHSA 648
LDY ID+ +YE + R C C GH++
Sbjct: 252 LDYRPEIDEKYYYAIYEIVVRGSCSCYGHAS 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,421,702
Number of Sequences: 27780
Number of extensions: 263187
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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