Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H08
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    69   6e-13
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    30   0.28 
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   1.5  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   3.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   4.5  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.9  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   7.9  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 35/69 (50%), Positives = 47/69 (68%)
 Frame = -3

Query: 696 TXTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKA 517
           T   LAA P + +KQ+LGE L+P +      L+GKITGMLLE+ NSELL +LE   +L  
Sbjct: 573 TAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNE 632

Query: 516 KVDEAVAVL 490
           +V+EA+ VL
Sbjct: 633 RVNEAIGVL 641


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 495 QQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLFSQPNQGAFSE 623
           QQQ H++ + E +H +  E      + K   L  Q  +GAF E
Sbjct: 249 QQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKERGAFME 291


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 684 LAAAPLQEQKQMLGERLF-PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVD 508
           L +A +Q+  +M G+  F P ++R H D  GK   +     +  LLH L    +   K++
Sbjct: 290 LESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSFKIE 349


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 160 ENFRYIHFSLIYYLILWELALVLSF 86
           +NF Y+ F  ++ L++W++  + SF
Sbjct: 184 KNFAYLTFISLFVLVIWQILYLRSF 208


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -3

Query: 624 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAV 499
           +QR++P    ++ G LL+ID + EL+  L  +   +  VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 297  YALLCNFKECKFTNKNT*LSTFLRCELMNSLTFTLTKKFIL 175
            Y L+ +F     TNK + L + L C L N L   + + F+L
Sbjct: 1718 YYLISSFVAISMTNKTSGLPSSLICNLQNFLA-RIARDFLL 1757


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 157 NFRYIHFSLIYYLILWELALVLSFIITFTSVF 62
           N   I ++L+YYLI+    L+ S I  FT  F
Sbjct: 317 NASSIIYTLMYYLIIAPTLLITSAICMFTIFF 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,595
Number of Sequences: 5004
Number of extensions: 40307
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)