Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_H08
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 86 3e-17
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 86 3e-17
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 86 3e-17
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 86 3e-17
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 81 6e-16
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical pr... 28 7.4
U53151-3|AAB37067.2| 388|Caenorhabditis elegans Serpentine rece... 28 7.4
Z68004-5|CAA91986.1| 114|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical ... 27 9.8
AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical ... 27 9.8
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 85.8 bits (203), Expect = 3e-17
Identities = 43/71 (60%), Positives = 57/71 (80%), Gaps = 2/71 (2%)
Frame = -3
Query: 696 TXTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESL 523
T MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E
Sbjct: 570 TSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELF 629
Query: 522 KAKVDEAVAVL 490
++KVDEA +VL
Sbjct: 630 RSKVDEAASVL 640
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 85.8 bits (203), Expect = 3e-17
Identities = 43/71 (60%), Positives = 57/71 (80%), Gaps = 2/71 (2%)
Frame = -3
Query: 696 TXTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESL 523
T MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E
Sbjct: 510 TSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELF 569
Query: 522 KAKVDEAVAVL 490
++KVDEA +VL
Sbjct: 570 RSKVDEAASVL 580
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 85.8 bits (203), Expect = 3e-17
Identities = 43/71 (60%), Positives = 57/71 (80%), Gaps = 2/71 (2%)
Frame = -3
Query: 696 TXTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESL 523
T MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E
Sbjct: 507 TSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELF 566
Query: 522 KAKVDEAVAVL 490
++KVDEA +VL
Sbjct: 567 RSKVDEAASVL 577
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 85.8 bits (203), Expect = 3e-17
Identities = 43/71 (60%), Positives = 57/71 (80%), Gaps = 2/71 (2%)
Frame = -3
Query: 696 TXTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESL 523
T MLAAA QEQKQ+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E
Sbjct: 570 TSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELF 629
Query: 522 KAKVDEAVAVL 490
++KVDEA +VL
Sbjct: 630 RSKVDEAASVL 640
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 81.4 bits (192), Expect = 6e-16
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Frame = -3
Query: 696 TXTMLAAAPLQEQKQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESL 523
T MLA A QEQKQ+LGER++ LI++M P+ AGKITGM+LEIDN+EL+ ML+ AE
Sbjct: 605 TSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAELF 664
Query: 522 KAKVDEAVAVL 490
++KV+EA VL
Sbjct: 665 RSKVEEAFGVL 675
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 546 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 647
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 338 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 371
>Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical
protein F29C12.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 546 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 647
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 340 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 373
>U53151-3|AAB37067.2| 388|Caenorhabditis elegans Serpentine
receptor, class r protein9 protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 160 ENFRYIHFSLIYYLILWELALVLSFIITFTSVFD*YHGLENLVSSNLLML 11
+NFR +H + + I W +A++ I F + Y G+E + S + +L
Sbjct: 127 DNFRILHILALCFSIPWFVAIMSWIIYNFINGKIYYGGIEQNLLSRIFIL 176
>Z68004-5|CAA91986.1| 114|Caenorhabditis elegans Hypothetical
protein F47B10.6 protein.
Length = 114
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +2
Query: 206 KEFINSQRRNVDSYVFLFVNLHSLKLH 286
+EF+ SQR+ +++Y+ + +N HS+ L+
Sbjct: 79 EEFVVSQRKQLNAYINI-INFHSISLY 104
>AL032631-5|CAA21573.1| 113|Caenorhabditis elegans Hypothetical
protein Y106G6H.3 protein.
Length = 113
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 674 HHSRNRNRCLGNDCFHLFRECTL 606
HH N LG C LFR CTL
Sbjct: 72 HHYNGNNIELGTACGRLFRVCTL 94
>AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical
protein H10E21.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 134 FDLLSHIMGVGFSSFIYYYFHI 69
F++L+ + G GF+S Y YF++
Sbjct: 153 FNILAFVFGYGFTSAAYMYFYL 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,287
Number of Sequences: 27780
Number of extensions: 217365
Number of successful extensions: 626
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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