Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H03
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    26   5.2  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    26   5.2  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   9.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   9.2  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   9.2  

>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/77 (19%), Positives = 26/77 (33%)
 Frame = -1

Query: 541 PILQPHEKDSVLVGSAILGACASQYFPNIQDAIHNMGGTADVIQPDSNTKLYHDKKYRIF 362
           P   PHEKD +     +        FP +    +N+      + P+  +     +     
Sbjct: 217 PFTYPHEKDPIFADYMLDAMTLFDVFPTLSQDTYNVLRACLCVSPEKRSLAKTREAVLAV 276

Query: 361 LKMYQDQLEYRSIMNSQ 311
            K   D  E  S +N +
Sbjct: 277 TKWTTDDEELESFVNEE 293


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 457 IQDAIHNMGGTADVIQPDSNTKLYHDKKYRIFLK-MYQDQLEY 332
           I  +  +MG   ++ QPD   +L HD K  IF K +  D + Y
Sbjct: 804 ITSSFPSMGLGMELAQPDVMERLPHDNKVGIFQKSLIVDMMVY 846


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 502 GSAILGACASQYFPNIQDAIHNMGGTADVIQPDSNTKLYHDKK 374
           G A  G C  QYF N+  +++ +G T      D NTK   D+K
Sbjct: 223 GLAPNGTC--QYFKNVCISLNILGDTVVKAISDDNTKDLPDEK 263


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 535 LQPHEKDSVLVGSAILGACASQYFPNIQDAIHNM 434
           LQ  E D++     ++    S  FP I D +HN+
Sbjct: 762 LQMSESDAIKYFEQLINDSVSALFPQIIDRMHNL 795


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 760 TMRGMMTGLTINSNEXNLAVLYLATLQALSYGTRHIID 647
           ++R +++  + N  E  L  +YL T +   Y  +H++D
Sbjct: 216 SLRKLLSSSSKNPKEPRLQTIYLKTNKRGLYTLKHVVD 253


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 54  YSNLVHTYSSH-ISFLEPYTVPKWRVVI 134
           Y NL HTY +H ++F +P+ V +   +I
Sbjct: 363 YDNLKHTYPAHSVTFGKPFEVNRLADII 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,500
Number of Sequences: 5004
Number of extensions: 72375
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)