Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H03
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0580 + 4303020-4303211,4303838-4303879,4304538-4304646,430...    65   5e-11
03_05_0469 + 24640925-24641081,24641292-24641644,24641870-246420...    28   7.2  

>02_01_0580 +
           4303020-4303211,4303838-4303879,4304538-4304646,
           4304731-4304859,4305002-4305121,4305223-4305343,
           4305888-4306044,4306377-4306427,4306573-4306695
          Length = 347

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 27/54 (50%), Positives = 42/54 (77%)
 Frame = -1

Query: 778 SPLADPTMRGMMTGLTINSNEXNLAVLYLATLQALSYGTRHIIDALIQAGYKPF 617
           SPLADP  +G++ G T++++E +LA+LYLAT+Q ++YGTRHI++     G+K F
Sbjct: 239 SPLADPKSKGIICGFTLDTSEKHLALLYLATIQGIAYGTRHIVEHCNAHGHKKF 292



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -1

Query: 466 FPNIQDAIHNMGGTADVIQPDSN--TKLYHDKKYRIFLKMYQDQLEYRSIM 320
           FP ++DA+  +     V+ P S+   K YHD KY+IF  +Y+ QL +RS M
Sbjct: 292 FPGVRDAMKALNAAGKVVYPSSDPRVKKYHDAKYQIFRSLYEQQLSHRSAM 342


>03_05_0469 +
           24640925-24641081,24641292-24641644,24641870-24642043,
           24642382-24642506,24643011-24643059,24643741-24643899,
           24644037-24644219
          Length = 399

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 331 CIPTGLGTFSEISCIFCHDIISYLNQAESHQLYRPYCVWHLEYS 462
           C+ T    F E+   +CHD+ S+  Q  SHQ  R   +  +E S
Sbjct: 256 CLETKSKQFEELEERYCHDLNSFQFQWISHQEERDAVLAKIEVS 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,024,443
Number of Sequences: 37544
Number of extensions: 405064
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)