Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H03
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    41   9e-04
Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine rec...    29   3.7  

>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
 Frame = -1

Query: 778 SPLADPTMRGMMTGLTINSNEXNLAVLYLATLQALSYGTRHIIDALIQ--AGYKPFKSLL 605
           +P  D T RG + GLT  +   ++    LA L+A+++ +  +I A+ Q   G     +L 
Sbjct: 356 TPYWDSTARGTILGLTQVTQREHIC---LAALRAVAFQSAEMIAAVEQDLEGGTKVTTLK 412

Query: 604 VCGGIIKDPLFVSTQADAASLPILQPHEKDSVLVGSAILGACASQ 470
           V GG+I + LF   QAD     I+ P   +    G+A+ G   +Q
Sbjct: 413 VDGGMIANKLFNEIQADIMGRDIVTPKITEISGWGAAVAGGIGAQ 457


>Z82265-7|CAB05171.2|  425|Caenorhabditis elegans Hypothetical
           protein F02H6.4 protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 538 ILQPHEKDSVLVGSAILGACASQYFPNIQDAIHNMGGTADVIQPDSNTKLYHD-KKYRIF 362
           +++  EKD  ++       C + + P   D IHN     D+++P    KL HD K  + +
Sbjct: 237 LIRQEEKDRQMLLKVGFKIC-NDWLP---DGIHNRPTPIDLLKPHERKKLAHDTKMLKFY 292

Query: 361 LKMYQ 347
           +K+ Q
Sbjct: 293 IKLTQ 297


>U97008-16|AAB52300.1|  303|Caenorhabditis elegans Serpentine
           receptor, class sx protein24 protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
 Frame = -2

Query: 249 YVYYTVVIQLKQIVLAFEYILNEFDCFHCVHRYCVFKRR*LPAILEQYMALKKIYV---K 79
           +VY     QL+ ++L  E +++   CF  +  Y +F    + ++L  ++ + ++YV    
Sbjct: 54  FVYCIYAAQLRVMILINESVMSSSTCF-LISIYGIFAMN-MQSLLALFIGIDRVYVIVYP 111

Query: 78  SKYVQ-DLSKHYSMVSI 31
            KY +  ++ +Y MV++
Sbjct: 112 GKYAKLSINYYYLMVTL 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,226,904
Number of Sequences: 27780
Number of extensions: 394900
Number of successful extensions: 897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)