Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H03
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          26   0.34 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.34 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.5  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   7.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.3  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 614 IIVSVWWHYKGSV 576
           +++SVWW YKG V
Sbjct: 66  VLLSVWWDYKGIV 78


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 614 IIVSVWWHYKGSV 576
           +++SVWW YKG V
Sbjct: 188 VLLSVWWDYKGIV 200


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 701 LISCHITSFIVWYETHHRRLDTSRL*TF*IIVSVWW 594
           +++  + S I+    HHR  DT  +  +  +V ++W
Sbjct: 304 MVASSVVSTILILNYHHRNADTHEMSEWVKVVFLYW 339


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 630 PACIKASMMCLVPYDKACNVARYK 701
           PAC   ++ CL PY  A +  +Y+
Sbjct: 313 PACTCKAVACLDPYVYAISHPKYR 336


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 422 SCTAHIVYGILNIRE 466
           SC   IVYG  NIR+
Sbjct: 309 SCMNPIVYGAFNIRD 323


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 614 IIVSVWWHYKGSV 576
           +++ VWW +KG V
Sbjct: 67  VLLLVWWDHKGIV 79


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 514 SVLVGSAILGACASQYFPNIQDA 446
           SV VGSA+ G      FP +  A
Sbjct: 56  SVPVGSAVAGTAGGALFPGMAAA 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,747
Number of Sequences: 438
Number of extensions: 5573
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)