Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H02
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O96115 Cluster: Erythrocyte membrane protein 1 (PfEMP1)...    35   1.9  
UniRef50_Q22D75 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  

>UniRef50_O96115 Cluster: Erythrocyte membrane protein 1 (PfEMP1),
           truncated; n=1; Plasmodium falciparum 3D7|Rep:
           Erythrocyte membrane protein 1 (PfEMP1), truncated -
           Plasmodium falciparum (isolate 3D7)
          Length = 355

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -1

Query: 405 PLSIHTYLYTNSYLKEIFLYIYKKKDAIS 319
           P  IHTY+YTN+Y   I ++IY+KK  I+
Sbjct: 4   PTCIHTYIYTNTY---ILIFIYRKKPNIT 29


>UniRef50_Q22D75 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1424

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 402  LSIHTYLYTNSYLKEIFLYIYKKKDAISFIIYHCQVNP*HVSPNQTNSIRKTV 244
            ++I+    TNS + ++ L  Y+ K+    +I  C  NP +  PNQ N +   +
Sbjct: 1279 ININNKFKTNSQINKVKLKGYRNKNNTKNLINLCTYNPFNPQPNQQNQVLSNI 1331


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,476,451
Number of Sequences: 1657284
Number of extensions: 10961160
Number of successful extensions: 19221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19216
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)