Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H02
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      29   3.7  
U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
           protein C47D12.1c protein.
          Length = 4053

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 324 ISFIIYHCQVNP*HVSPNQTNSIRKTVLDFVNSLSCV 214
           +SF+   C  +P  ++ N T  +RK +L+ +  LS V
Sbjct: 70  LSFLQVFCNTSPQFIAENNTQQLRKLMLEIILRLSNV 106


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical
           protein C47D12.1b protein.
          Length = 4061

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 324 ISFIIYHCQVNP*HVSPNQTNSIRKTVLDFVNSLSCV 214
           +SF+   C  +P  ++ N T  +RK +L+ +  LS V
Sbjct: 70  LSFLQVFCNTSPQFIAENNTQQLRKLMLEIILRLSNV 106


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical
           protein C47D12.1a protein.
          Length = 4064

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 324 ISFIIYHCQVNP*HVSPNQTNSIRKTVLDFVNSLSCV 214
           +SF+   C  +P  ++ N T  +RK +L+ +  LS V
Sbjct: 70  LSFLQVFCNTSPQFIAENNTQQLRKLMLEIILRLSNV 106


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 324 ISFIIYHCQVNP*HVSPNQTNSIRKTVLDFVNSLSCV 214
           +SF+   C  +P  ++ N T  +RK +L+ +  LS V
Sbjct: 70  LSFLQVFCNTSPQFIAENNTQQLRKLMLEIILRLSNV 106


>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 100 GNTTEHILKYSTSLLRI-RRLKFLYIPYHVSQSH 198
           GN  E + KY+TSL+ +  +LK+++ P   +  H
Sbjct: 22  GNFDEFLTKYNTSLMELGDQLKYVFFPASTACKH 55


>AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical
           protein K09F6.8 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 486 WNRDVFKM*THYH-VN--RLYLIFSISIPVPLSIHTYLYTNSYLKEIFLYIYKKKDAISF 316
           WNR  FK  T  H +N  R Y      I +P+S +  L    +  E   Y  K  DA+ +
Sbjct: 140 WNR--FKRRTVMHQINTLRFYAPRGTVIQIPISFYIRLTVGKHHSETLRYTLKLHDALKY 197

Query: 315 II 310
           ++
Sbjct: 198 LL 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,152
Number of Sequences: 27780
Number of extensions: 277863
Number of successful extensions: 504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)