Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_H02
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.7  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/38 (18%), Positives = 20/38 (52%)
 Frame = -1

Query: 429 IFSISIPVPLSIHTYLYTNSYLKEIFLYIYKKKDAISF 316
           +F   +  P+    +   N Y K++F+Y    ++++++
Sbjct: 649 VFGFPLDRPMWAWNFTIPNMYFKDVFIYNRPNEESMNY 686


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/38 (18%), Positives = 20/38 (52%)
 Frame = -1

Query: 429 IFSISIPVPLSIHTYLYTNSYLKEIFLYIYKKKDAISF 316
           +F   +  P+    +   N Y K++F+Y    ++++++
Sbjct: 649 VFGFPLDRPMWAWNFTIPNMYFKDVFIYNRPNEESMNY 686


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 442 QIVFNIQYKYTSAFVNTYIP 383
           QIVFN++ +      +TYIP
Sbjct: 204 QIVFNLRRRLGYHLFHTYIP 223


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -3

Query: 331 RCDFIHYLSLSSQSLTRVAESDELDTKNGFRFCK*FIVCWLS 206
           +C+    +S+  + +T  +  + +D  NG    +   VC+ S
Sbjct: 355 KCEDERVISIPDKEITVPSNEETIDINNGAELMQETHVCFFS 396


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +2

Query: 413 ILILNIKYNLLT 448
           +++LN+ YN+LT
Sbjct: 337 LIVLNLSYNMLT 348


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -1

Query: 312 IYHCQVNP*HVSPNQTNSIRKTVLDFVNSLSCVG 211
           + +C++   H        +R  ++DF+N L  +G
Sbjct: 167 VRNCELVGLHDLDQSQEYVRSKLVDFLNDLVAIG 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,000
Number of Sequences: 438
Number of extensions: 3635
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)