Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G23
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    26   3.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   6.3  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   8.4  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   8.4  

>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 391 KDGVNVDNTYKDRITRHNRSSGRRLVIKEVWAED 290
           KDGVNVDN  K      N+S+G  ++I E   E+
Sbjct: 82  KDGVNVDNVKK----IENKSTGVAMIIVEETGEN 111


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 88   VRHCKSTQLAVXEFLSPYKVLXRPRL 165
            + HC  +     EFLS  KVL +P+L
Sbjct: 1080 ILHCDDSMNECVEFLSSDKVLNQPKL 1105


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 144  GIVXSSPWVASVRFSGLVVKVGALTTLKVIVC 239
            G + SS +   V    ++ KVGAL  LK+++C
Sbjct: 1005 GCITSSKFEGGVCSGEVLDKVGALILLKMLLC 1036


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 425 WRNSPSPPKLVQGRCKRGQHLQGSHNPPQQVLWE 324
           W++S +P  L     +       +HNPP  + W+
Sbjct: 316 WQHSSTPASLFNSVERNNSLTAVAHNPPGSIGWQ 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,219
Number of Sequences: 5004
Number of extensions: 50985
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)