Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G23
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1106 + 24017601-24019955                                         30   1.2  
02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434     29   2.1  
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223     28   4.9  
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037     28   4.9  
08_01_0198 + 1625893-1626795                                           28   6.5  
07_01_0026 + 190568-190829,192475-194534,194620-195168                 28   6.5  
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878...    27   8.6  

>07_03_1106 + 24017601-24019955
          Length = 784

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -3

Query: 583 SSPAADEGVPVVTYYITQVTPASEPTYGELIPQYLSDHVVAKVGDLTYLYCIYGGTPLAH 404
           S+   +E + +V Y +TQ    +E TY  ++  Y       + G LT         P  H
Sbjct: 710 SNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGY------CRNGKLTDAKIFVSNLPQLH 763

Query: 403 PSWSK 389
           P +SK
Sbjct: 764 PGYSK 768


>02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434
          Length = 287

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 388 PWTSLGGLGEFRHKCSIDTSDRQLSPPRGHSSTEGSALHTWAPRRESLA 534
           PW+  GG G  R   +  TSD  L PPR    T  + L      R S A
Sbjct: 60  PWSPSGGEGFRRLSSASPTSDPGLHPPRRRQPTCAAPLGAQVAARVSAA 108


>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
          Length = 437

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 475 DHVVAKVGDLTYLYCIY-GGTPLAHPSWSKDGVNVDNT 365
           +H  A   D   +YCI+ GGTP +   W  D +  D+T
Sbjct: 117 NHRCADYKDSRGIYCIFEGGTPDSRLDWGPDMICSDDT 154


>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
          Length = 438

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 475 DHVVAKVGDLTYLYCIY-GGTPLAHPSWSKDGVNVDNT 365
           +H  A   D   +YCI+ GGTP +   W  D +  D+T
Sbjct: 117 NHRCADYKDSRGIYCIFEGGTPDSRLDWGPDMICSDDT 154


>08_01_0198 + 1625893-1626795
          Length = 300

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 289 AGTYTCDVDNQAGRRLQHTITFSVVSAPTFT 197
           +GTY  DV   +G R QH      + +PTFT
Sbjct: 13  SGTYVLDVHGFSGLRRQHCGGGGCIVSPTFT 43


>07_01_0026 + 190568-190829,192475-194534,194620-195168
          Length = 956

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 556 PVVTYYITQVTPASEPTYGELIPQYLSDHVVAKVGDLT 443
           PV   Y+        P+YGEL+ +     + A VGD++
Sbjct: 513 PVPVSYVVVGDGVKNPSYGELVQRVAEGELDAAVGDIS 550


>05_03_0131 +
           8779006-8779073,8779517-8779662,8779739-8780794,
           8781070-8781232,8781423-8781494,8782076-8782147,
           8782643-8782815,8782958-8783163,8783277-8783403,
           8783793-8783864,8783984-8784176,8784298-8784768,
           8785635-8785740
          Length = 974

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -3

Query: 568 DEGVPVVTYYITQVTPASEPTYGELIPQYLSDHVVAKVGDLTYLYCIYG 422
           D+G+P + ++I  +   +      ++   +S    A V  L+ L+CI+G
Sbjct: 18  DQGLPRIVFFIVTIYTINREQKNVILNVSMSQWEAAFVVTLSLLFCIHG 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,727,581
Number of Sequences: 37544
Number of extensions: 431293
Number of successful extensions: 1389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)