Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G20
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.9  

>SPAC23C11.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 561 FQSSRPPSPSQAWWLLWPTALSCLELVRCPSTAPVWSTDR 442
           + +S  PS +Q+  +L    +  + +VRCPS  P++ T R
Sbjct: 56  YLNSAAPSKAQSHPVLLAAGVGGI-VVRCPSRKPIYRTTR 94


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -2

Query: 393 WFLQSPPSLKPRTLLLSSWML 331
           + L++PPS++PR +  + W++
Sbjct: 284 FILEAPPSMQPRLIQFTRWVV 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,210
Number of Sequences: 5004
Number of extensions: 37007
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)