Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G19
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                 144   7e-35
SB_19568| Best HMM Match : UBACT (HMM E-Value=8.2e-38)                102   3e-22
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 65   6e-11
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 29   5.9  

>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score =  144 bits (349), Expect = 7e-35
 Identities = 69/111 (62%), Positives = 85/111 (76%), Gaps = 6/111 (5%)
 Frame = -2

Query: 631  PSTNTYNENKWTLWDRFEVKG------EITLQQFLDHFKNEHKLEITMLSQGVCMLYSFF 470
            P   TY + ++TLWDRFEV+G      E+TLQ+F+D+FK + +LEITMLSQGVCMLYSFF
Sbjct: 785  PHRVTYYDTEFTLWDRFEVQGIKENGEEMTLQEFIDYFKEKERLEITMLSQGVCMLYSFF 844

Query: 469  MPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPY 317
            M  AK  ERL   +SE V KVSKKK++PHV ALV ELCCND++  DVEVP+
Sbjct: 845  MAPAKLKERLASKVSEAVVKVSKKKIKPHVKALVLELCCNDENDEDVEVPW 895


>SB_19568| Best HMM Match : UBACT (HMM E-Value=8.2e-38)
          Length = 95

 Score =  102 bits (245), Expect = 3e-22
 Identities = 47/58 (81%), Positives = 51/58 (87%)
 Frame = -2

Query: 805 KLIXGKIIPAIATTTSVVAGXVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIA 632
           KLI GKIIPAIATTT++V+G VCLELYKL QG  K E FKNGF+NLALPFFGFSEPIA
Sbjct: 33  KLIAGKIIPAIATTTAIVSGLVCLELYKLVQGSKKYETFKNGFINLALPFFGFSEPIA 90


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 34/63 (53%), Positives = 43/63 (68%)
 Frame = -2

Query: 805 KLIXGKIIPAIATTTSVVAGXVCLELYKLAQGFNKLEVFKNGFVNLALPFFGFSEPIAPS 626
           K I GKIIPAIATTT+ VAG   +EL K+  G    + ++NGF+NLALP+  FSEP  P+
Sbjct: 152 KRIAGKIIPAIATTTAAVAGLATIELVKIVMG-RPRDDYRNGFMNLALPYVIFSEP-GPA 209

Query: 625 TNT 617
             T
Sbjct: 210 ATT 212



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
 Frame = -2

Query: 601 WTLWDRFEVKGE--ITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMP-KAKRLE 446
           +T+WDR+ VKG     L+ F    K+++ L++TM+ QGV M+Y   +P  AKRL+
Sbjct: 277 FTIWDRWIVKGNKNFKLKDFNQCIKDQYGLQVTMVVQGVKMIYVPVVPGHAKRLD 331


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 540 TSKTNTSWRSPCCLKVCACFIRSSCPKPSGWND*TCQCRRWSQKCPRRS 394
           T KT  ++ SP      A  +   C KP+  +D TC C +     PR S
Sbjct: 69  THKTRPNYTSPTTN--AARIVNEGCTKPASEHDVTCSCPQRETTPPRPS 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,703,652
Number of Sequences: 59808
Number of extensions: 515676
Number of successful extensions: 1310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)