Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G19
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.47 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 322 GPPHRSRHHHCSTIQKLMHSH 384
           GPPH   HHH    Q L H H
Sbjct: 348 GPPH---HHHHHQTQSLQHLH 365


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 325 PPHRSRHHHCST 360
           PPH+  HHH ST
Sbjct: 809 PPHQQLHHHQST 820


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 501 LKVCACFIRSSCPKPSGWND*TCQCRRWSQKC-PRRSWNR 385
           L +CA  ++ SC K  G +    +C + S  C P R+ +R
Sbjct: 76  LGICAEGMQCSCNKCIGCSAEKFECSKTSNPCLPHRNSDR 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,840
Number of Sequences: 438
Number of extensions: 4950
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)