Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G18
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    28   7.0  
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    28   7.0  
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     28   7.0  
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     28   7.0  
AC024881-8|AAK71411.2|  318|Caenorhabditis elegans Serpentine re...    28   7.0  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical
           protein F17C8.3 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 299 IFLNAFLKLYLCNKLKYSFVEELDTYKTPTRRQIATFFFKK 177
           +F+  FL  +  N LKY F +       PTR ++A F +K+
Sbjct: 191 LFVKGFLTYWKLN-LKYFFSDMRSARDFPTREELAVFDYKR 230


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = -3

Query: 287 AFLKLYLCNKLKYSFVEELDTYKTPTRRQIATFFFKKKNLLYSMAHGMTSRLLTLC 120
           +F  ++  ++ + + +++  TYK  T   ++TF       LY++     +R   +C
Sbjct: 168 SFFNMFSTDQERSAMMKQFKTYKNQTSEDVSTFMRANIKKLYNLLRYKKARQWVMC 223


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = -3

Query: 287 AFLKLYLCNKLKYSFVEELDTYKTPTRRQIATFFFKKKNLLYSMAHGMTSRLLTLC 120
           +F  ++  ++ + + +++  TYK  T   ++TF       LY++     +R   +C
Sbjct: 166 SFFNMFSTDQERSAMMKQFKTYKNQTSEDVSTFMRANIKKLYNLLRYKKARQWVMC 221


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = -3

Query: 287 AFLKLYLCNKLKYSFVEELDTYKTPTRRQIATFFFKKKNLLYSMAHGMTSRLLTLC 120
           +F  ++  ++ + + +++  TYK  T   ++TF       LY++     +R   +C
Sbjct: 166 SFFNMFSTDQERSAMMKQFKTYKNQTSEDVSTFMRANIKKLYNLLRYKKARQWVMC 221


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = -3

Query: 287 AFLKLYLCNKLKYSFVEELDTYKTPTRRQIATFFFKKKNLLYSMAHGMTSRLLTLC 120
           +F  ++  ++ + + +++  TYK  T   ++TF       LY++     +R   +C
Sbjct: 168 SFFNMFSTDQERSAMMKQFKTYKNQTSEDVSTFMRANIKKLYNLLRYKKARQWVMC 223


>AC024881-8|AAK71411.2|  318|Caenorhabditis elegans Serpentine
           receptor, class t protein53 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 302 VIFLNAFLKLYLCNKLKYSFVEELDTYKTPTRRQI 198
           ++FL +FL ++ C K++  F +     +T  +RQI
Sbjct: 204 LVFLTSFLYMFFCFKVRRQFRKSFRPKRTARQRQI 238


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 350 MRNVRMKYRFTMKLTFVIFLNAFLKLYLCNKLKY-SFVEELD--TYKTPT 210
           M+ +RM+ +  + L FV  L +F+  YLC  L Y S V   D  TY  PT
Sbjct: 304 MKILRMRSQHIIYLAFVGHLTSFILAYLC--LPYDSTVHSTDASTYLAPT 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,194,466
Number of Sequences: 27780
Number of extensions: 242722
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)