Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G15
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    53   2e-08
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    28   0.62 

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 31/71 (43%), Positives = 40/71 (56%)
 Frame = -3

Query: 240 RVAKVTGGVAXKLSKIRVVRKASARVYIV*HQKMKGKLRNHDKNKTDKP*X*RAXKTRAM 61
           RV K+ GG   KLSKI+  RK  AR+  V ++  +   R   KNK   P   R  KTRA+
Sbjct: 31  RVQKIAGGSGSKLSKIKTTRKDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAI 90

Query: 60  RQALTTHEAKR 28
           R+ALT +E  R
Sbjct: 91  RRALTPYEQSR 101


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 314 EHFTLPILTVTFSSKRTLKRIPIG 385
           EH TLP L V F+ +R +  +P+G
Sbjct: 814 EHGTLPFLYVKFAVERAVLNLPVG 837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,318
Number of Sequences: 5004
Number of extensions: 12138
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)