Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G15
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    65   2e-11
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    33   0.064

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 42/99 (42%), Positives = 51/99 (51%)
 Frame = -3

Query: 333 MGKVKCSELRTXXXXXXXXXXXXXXXXXXXLRVAKVTGGVAXKLSKIRVVRKASARVYIV 154
           M ++K  ELR                    LRVAKVTGG   KLSKI+VVR + ARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 153 *HQKMKGKLRNHDKNKTDKP*X*RAXKTRAMRQALTTHE 37
             QK +  LR   K K+  P   R  KTRA+R+ LT H+
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQ 99


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 33.5 bits (73), Expect = 0.064
 Identities = 34/103 (33%), Positives = 42/103 (40%)
 Frame = -3

Query: 345 VTVKMGKVKCSELRTXXXXXXXXXXXXXXXXXXXLRVAKVTGGVAXKLSKIRVVRKASAR 166
           VTV M ++K   LR                    LRVA+VTGG   KLS I+ VR A   
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 165 VYIV*HQKMKGKLRNHDKNKTDKP*X*RAXKTRAMRQALTTHE 37
            Y               K K+  P   R  KT A+R+ LT H+
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQ 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,048,028
Number of Sequences: 37544
Number of extensions: 82667
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)