Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G15
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    69   2e-12
AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical...    28   2.9  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   3.8  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   3.8  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 44/99 (44%), Positives = 52/99 (52%)
 Frame = -3

Query: 333 MGKVKCSELRTXXXXXXXXXXXXXXXXXXXLRVAKVTGGVAXKLSKIRVVRKASARVYIV 154
           M K+KC  LR                    LRV+KVTGG A KLSKIRVVRK  AR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 153 *HQKMKGKLRNHDKNKTDKP*X*RAXKTRAMRQALTTHE 37
            +Q  K +LR    +   KP   R  KTRA+R+ LT HE
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHE 99


>AL132862-26|CAB60561.1|  874|Caenorhabditis elegans Hypothetical
           protein Y73F8A.33 protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 96  ACLSCFCRGFSACPSSSGATQCKHV 170
           +C +C+ R    CP       CKHV
Sbjct: 605 SCGACWTRFLCTCPGQKSGVSCKHV 629


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 90   LKACLSCFCRGFSA-CPSSSG-ATQCKH 167
            L AC+ C C G SA C   +G  T C+H
Sbjct: 1824 LGACVPCECNGHSATCDPDTGICTDCEH 1851


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 90   LKACLSCFCRGFSA-CPSSSG-ATQCKH 167
            L AC+ C C G SA C   +G  T C+H
Sbjct: 1824 LGACVPCECNGHSATCDPDTGICTDCEH 1851


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 90   LKACLSCFCRGFSA-CPSSSG-ATQCKH 167
            L AC+ C C G SA C   +G  T C+H
Sbjct: 1824 LGACVPCECNGHSATCDPDTGICTDCEH 1851


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 90   LKACLSCFCRGFSA-CPSSSG-ATQCKH 167
            L AC+ C C G SA C   +G  T C+H
Sbjct: 1824 LGACVPCECNGHSATCDPDTGICTDCEH 1851


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,068,737
Number of Sequences: 27780
Number of extensions: 74298
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)