Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G08
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.3  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 732 DPLKPKSLKGIEYEPDN 682
           D  KP++ KGI  EP N
Sbjct: 550 DSTKPETSKGINAEPSN 566


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 746 PHPSSTPLSLRVXKASNMSRTTSPTGEQVNTKSLSSITFKL 624
           PH    PLS +   +S+     SP   QV+  + S +   L
Sbjct: 436 PHDDQPPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAAL 476


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 411 TIFNID*IIAIRSITPYCNIKYTSYLANDMDQNQII 518
           T+FN +   A RS  P+   + +  +A  MD+N ++
Sbjct: 285 TLFNENSEAAARSFVPFSIERSSQSVAEVMDRNGVL 320


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 725 LSLRVXKASNMSRTTSPTGEQVNTKSLSSITFKLR 621
           LS ++  + ++S    P G Q+N   L  I  ++R
Sbjct: 102 LSDKLESSDDISLFRGPEGIQINATELQKIELEIR 136


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 315  CDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSV 208
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1889 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1923


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 315  CDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSV 208
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1885 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1919


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 46  ALSNKWLGXENVSNLCXYKINGTNYN 123
           +LSNK +   N  N   Y  N  NYN
Sbjct: 317 SLSNKTIHNNNNYNNNNYNNNYNNYN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,846
Number of Sequences: 438
Number of extensions: 4034
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)