Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G07
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0214 + 21616019-21616086,21616205-21616252,21616336-216164...    33   0.12 
01_06_0639 + 30772804-30772904,30773386-30775675                       27   6.0  
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565...    27   7.9  

>09_06_0214 +
           21616019-21616086,21616205-21616252,21616336-21616427,
           21616555-21616645,21617660-21617720,21617810-21617887,
           21617979-21618029,21618118-21618191,21618306-21618378,
           21618762-21618819,21618899-21618969,21619045-21619110,
           21619327-21619359,21619445-21619497,21619572-21619647,
           21619729-21619785,21619874-21619957,21620037-21620135,
           21620260-21620364,21620575-21620643,21621019-21621108
          Length = 498

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 103 GM*GAEGWNPPSXSDVGHSVSNSVRADVRKFSADLKSFVFSAN 231
           G  G +GW PP   DV  S++NS + D     A  K +VF AN
Sbjct: 181 GKTGKDGWYPPGHGDVFPSLNNSGKLDT--LLAQGKEYVFVAN 221


>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 327 RQDNDNIGVEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTY 160
           R+  +N GV GY TG+   +G     +G   N     +A + R ++ Y GP G +Y
Sbjct: 221 RRQGNNSGVSGYGTGHH-YHGSDTYRSGY--NTQNNQQAYDSR-QYGY-GPSGQSY 271


>03_05_0845 -
           28155065-28155374,28156201-28156342,28156375-28156505,
           28156591-28156784,28156859-28156969,28157234-28157399,
           28157501-28157668,28157766-28158787
          Length = 747

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 204 VRGEFAYIGPDGVTYAVTYVAXR 136
           + G+  ++GPDG TY   + A R
Sbjct: 96  IEGQGVFVGPDGATYRGAWAADR 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,141,182
Number of Sequences: 37544
Number of extensions: 135582
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)