Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G03
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr...    28   9.2  
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro...    28   9.2  
AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical...    28   9.2  

>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
           protein F33C8.1b protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -2

Query: 78  GEFADEHTRRCSSIDVWNVTTKIWS 4
           GEF D  +   ++IDV+NVT++IWS
Sbjct: 308 GEFFDGSSDP-NNIDVYNVTSRIWS 331


>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
           protein F33C8.1a protein.
          Length = 1271

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -2

Query: 78  GEFADEHTRRCSSIDVWNVTTKIWS 4
           GEF D  +   ++IDV+NVT++IWS
Sbjct: 308 GEFFDGSSDP-NNIDVYNVTSRIWS 331


>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
           protein.
          Length = 1329

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -2

Query: 78  GEFADEHTRRCSSIDVWNVTTKIWS 4
           GEF D  +   ++IDV+NVT++IWS
Sbjct: 308 GEFFDGSSDP-NNIDVYNVTSRIWS 331


>AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical
           protein F46E10.11 protein.
          Length = 178

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -2

Query: 192 CKQCHANXRNCNNLKYCSVLRXRNYMLXMCC 100
           C  C+ N   C+   YC  +R     +  CC
Sbjct: 60  CSTCNCNTATCSTSSYCQQIRSNWRCINGCC 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,419
Number of Sequences: 27780
Number of extensions: 305635
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)