Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_G03
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.48 
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    24   1.9  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   4.5  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 25.8 bits (54), Expect = 0.48
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 302 GLPTKRHTQYFPC 340
           G+P +RH +Y+PC
Sbjct: 205 GVPAERHKKYYPC 217


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 494 ELIYVSRNKLMTH 456
           E +Y SRN LMTH
Sbjct: 42  ERVYCSRNSLMTH 54


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 395 FECAYTSSVYTNTKAVLMHM 336
           F C Y   VY +  A+ MH+
Sbjct: 17  FSCKYCEKVYVSLGALKMHI 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,791
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)