Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F24
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    99   3e-22
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    28   0.44 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.44 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.4  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   4.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.1  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   5.5  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   5.5  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   9.5  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 98.7 bits (235), Expect = 3e-22
 Identities = 52/107 (48%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
 Frame = -2

Query: 325 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXX 152
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 151 XXXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
                 K+V R   C   + + Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 61  KAKVTKKVVLRL-ECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 135 LVVFAFFLKLGLDXXXXXXXLRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 314
           L+VF FF+  G         LR  R+L      S+ F +   L TL+H   + + + C G
Sbjct: 40  LLVFGFFMIAGFSKSVSFF-LRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92

Query: 315 TFTIFE 332
            F +F+
Sbjct: 93  FFNLFK 98


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 216 PWAACLSLDFLYCDTLCTLWHL 281
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 60   CLHLFNATCVSHLXN--QHTQVRXTIFLVVF 146
            CLHL  A+ V+H  +  QH Q R  I  + F
Sbjct: 1376 CLHLLFASLVAHKFDQPQHAQTRTKIIAIFF 1406


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 377 AGRCSLTFVDIVPNELKNGERTKTAQDVL 291
           +GRC L F+ ++P E  +  +T  + + L
Sbjct: 133 SGRCVLQFLSVLPEEASDPRKTSLSWEEL 161


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 240 PRKGTLPRVEDVMIVNSRVTVVSPNPAS-KRRQKPLRKLCXGLE 112
           P+K + P+V  +M      +VV+P+P S     + +RK+  G++
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTSLLDPARAVRKVIDGID 663


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 18  IICPFLFLSPPSSKCLHLFNATCVSHLXNQH 110
           +IC   F +P  + C H F + C+     +H
Sbjct: 30  LICHEYFRAPLITSCSHTFCSFCIRDYLREH 60


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 252 STKSPRKGTLPRVEDVMIVNSRVTVVSPN 166
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 243 SPRKGTLPRVEDVMIVNSRVTVVSPNP 163
           SP +G+LPR     ++ + +++   NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,652
Number of Sequences: 5004
Number of extensions: 23605
Number of successful extensions: 90
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)