Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F24
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 93 9e-20
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 93 9e-20
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 93 9e-20
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 91 4e-19
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 91 4e-19
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 91 4e-19
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 91 4e-19
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 37 0.005
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 29 1.3
06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998 29 1.7
01_01_1106 + 8750597-8754031 28 2.3
05_05_0226 + 23442971-23443857,23444209-23446324 28 3.0
11_06_0050 + 19631164-19631987,19632103-19634023 27 4.0
12_02_0879 + 23960084-23961551,23961796-23962184 27 5.3
11_01_0266 - 2010572-2011879 26 9.2
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 92.7 bits (220), Expect = 9e-20
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXX 152
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 151 XXXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKG 26
KIV + C + +Q +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLKL-QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 92.7 bits (220), Expect = 9e-20
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXX 152
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 151 XXXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKG 26
KIV + C + +Q +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLKL-QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 92.7 bits (220), Expect = 9e-20
Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXX 152
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 151 XXXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKG 26
KIV + C + +Q +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLKL-QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 90.6 bits (215), Expect = 4e-19
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Frame = -2
Query: 322 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXX 149
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 148 XXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKG 26
KIV + C + +Q +KRCKHFE+GGDKK KG
Sbjct: 90 AKTTKKIVLKL-QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 90.6 bits (215), Expect = 4e-19
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Frame = -2
Query: 322 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXX 149
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 148 XXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKG 26
KIV + C + +Q +KRCKHFE+GGDKK KG
Sbjct: 90 AKTTKKIVLKL-QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 90.6 bits (215), Expect = 4e-19
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Frame = -2
Query: 322 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXX 149
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 88
Query: 148 XXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKG 26
KIV + C + +Q +KRCKHFE+GGDKK KG
Sbjct: 89 AKTTKKIVLKL-QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 128
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 90.6 bits (215), Expect = 4e-19
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Frame = -2
Query: 322 VNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXX 149
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 148 XXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKG 26
KIV + C + +Q +KRCKHFE+GGDKK KG
Sbjct: 90 AKTTKKIVLKL-QCQSCKHYSQHPIKRCKHFEIGGDKKGKG 129
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 37.1 bits (82), Expect = 0.005
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -2
Query: 88 TQVALKRCKHFELGGDKKRKG 26
+Q +KRCKHF++GGDKK KG
Sbjct: 38 SQHPIKRCKHFKIGGDKKGKG 58
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 252 STKSPRKGTLPRVEDVMIVNSRV 184
++ SP+K T PRVED M++ S +
Sbjct: 451 ASSSPQKQTAPRVEDDMVITSSI 473
>06_01_0415 + 2958746-2959110,2960468-2960593,2961314-2961998
Length = 391
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 306 SAGRTAKNVNATKYTRYHSTKSPRKGTLPR 217
S+GRTA++ + R+H T RKG LPR
Sbjct: 99 SSGRTARDAAVAQQERHHDTIKRRKG-LPR 127
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 195 LRS*RLLPWAACLSLDFLYCDTLCTLWHLHFLQYVLRC 308
L+S LL C +L+ L DT+C+L +LHFL + RC
Sbjct: 540 LQSLHLLNLKGCGNLEILP-DTICSLQNLHFLN-LSRC 575
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 207 RLLPWAACLSLDFLYCDTLCTLWHLHFLQY 296
R+L C LD + +C LWHL +L +
Sbjct: 595 RVLDLQECSDLDDDHLKYICKLWHLKYLSF 624
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 27.5 bits (58), Expect = 4.0
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 207 RLLPWAACLSLDFLYCDTLCTLWHLHFLQ 293
R+L ++ C ++ +C +C L+HL +L+
Sbjct: 577 RVLDFSGCDKVENQHCKDICKLFHLRYLR 605
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -3
Query: 318 TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPASKRRQK 142
T ++S G +K V ATK+ R +S +P+V+++ V S TV+ + R+ K
Sbjct: 315 TIESSNG--SKVVRATKFNRDKKFRSTVASNVPKVKEIK-VTSPATVMDQSSKPTRQSK 370
>11_01_0266 - 2010572-2011879
Length = 435
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -2
Query: 256 SQYKKSKERHAAQGRRRYDR 197
S+ +K+++RH A+G+ YD+
Sbjct: 3 SEKRKTRDRHGARGKASYDK 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,364,161
Number of Sequences: 37544
Number of extensions: 158501
Number of successful extensions: 516
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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