Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F24
         (389 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   3.9  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   5.2  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    22   9.1  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    22   9.1  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 301 CAVLVRSPFLSSFGTISTNVKEHRPAE 381
           C  + R P+  +F T+   VK   P E
Sbjct: 337 CDEIARKPWGLAFNTLMNKVKSSEPVE 363


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 132 FLVVFAFFLKLGLDXXXXXXXLRS*RLL 215
           F++V    L+LGL+       LRS RLL
Sbjct: 877 FIIVALSLLELGLEGVQGLSVLRSFRLL 904


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 21  ICPFLFLSPPSSKCLHLFNATC 86
           +C   F+ P  +KC H F   C
Sbjct: 249 VCRESFVDPIVTKCKHYFCERC 270


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 21  ICPFLFLSPPSSKCLHLFNATC 86
           +C   F+ P  +KC H F   C
Sbjct: 249 VCRESFVDPIVTKCKHYFCERC 270


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,281
Number of Sequences: 2352
Number of extensions: 6633
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30356973
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)