Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F24
(389 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal... 109 2e-24
CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein. 109 2e-24
BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein L36a-... 109 2e-24
BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein L36a-... 109 2e-24
BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein L36a-... 109 2e-24
BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein L36a-... 109 2e-24
AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein L36a-... 109 2e-24
U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protei... 108 5e-24
CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein. 108 5e-24
BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a ... 108 5e-24
BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a ... 108 5e-24
BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a ... 108 5e-24
BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a ... 108 5e-24
AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting ... 108 5e-24
AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing prot... 108 5e-24
AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a ... 108 5e-24
BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein protein. 44 1e-04
AC006530-6|AAD30184.1| 391|Homo sapiens hypothetical protein pr... 33 0.33
BC113477-1|AAI13478.1| 636|Homo sapiens potassium voltage-gated... 30 3.1
BC113475-1|AAI13476.1| 636|Homo sapiens potassium voltage-gated... 30 3.1
AL512665-2|CAI16955.1| 636|Homo sapiens potassium voltage-gated... 30 3.1
AL512665-1|CAI16956.1| 655|Homo sapiens potassium voltage-gated... 30 3.1
AL450997-2|CAI19097.1| 636|Homo sapiens potassium voltage-gated... 30 3.1
AL450997-1|CAI19096.1| 655|Homo sapiens potassium voltage-gated... 30 3.1
AL049557-3|CAB55687.2| 636|Homo sapiens potassium voltage-gated... 30 3.1
AL049557-2|CAI22711.1| 655|Homo sapiens potassium voltage-gated... 30 3.1
AF205857-1|AAF20925.1| 655|Homo sapiens potassium ionic channel... 30 3.1
AF205856-1|AAF20924.1| 636|Homo sapiens potassium ionic channel... 30 3.1
AF187964-1|AAF01045.1| 636|Homo sapiens voltage gated potassium... 30 3.1
AF187963-1|AAF01044.1| 655|Homo sapiens voltage gated potassium... 30 3.1
AF166011-2|AAF68178.1| 636|Homo sapiens voltage-gated potassium... 30 3.1
AF166011-1|AAF68177.1| 655|Homo sapiens voltage-gated potassium... 30 3.1
U64805-1|AAC00049.1| 759|Homo sapiens Brca1-delta11b protein. 28 9.3
U14680-1|AAA73985.1| 1863|Homo sapiens breast and ovarian cancer... 28 9.3
L78833-1|AAC37594.1| 1863|Homo sapiens BRCA1 protein. 28 9.3
DQ478408-3|ABF14462.1| 1822|Homo sapiens early onset breast canc... 28 9.3
DQ190457-3|ABA29229.1| 1822|Homo sapiens breast cancer 1 early o... 28 9.3
DQ190456-3|ABA29226.1| 1863|Homo sapiens breast cancer 1 early o... 28 9.3
DQ190455-3|ABA29223.1| 1863|Homo sapiens breast cancer 1 early o... 28 9.3
DQ190454-3|ABA29220.1| 1863|Homo sapiens breast cancer 1 early o... 28 9.3
DQ190453-3|ABA29217.1| 1863|Homo sapiens breast cancer 1 early o... 28 9.3
DQ190452-3|ABA29214.1| 1863|Homo sapiens breast cancer 1 early o... 28 9.3
DQ190451-3|ABA29211.1| 1863|Homo sapiens breast cancer 1 early o... 28 9.3
DQ190450-3|ABA29208.1| 1863|Homo sapiens breast cancer 1 early o... 28 9.3
BC106745-1|AAI06746.1| 473|Homo sapiens BRCA1 protein protein. 28 9.3
BC085615-1|AAH85615.1| 624|Homo sapiens BRCA1 protein protein. 28 9.3
BC072418-1|AAH72418.1| 699|Homo sapiens BRCA1 protein protein. 28 9.3
BC030969-1|AAH30969.1| 657|Homo sapiens BRCA1 protein protein. 28 9.3
AY751490-1|AAU93634.1| 1841|Homo sapiens breast and ovarian canc... 28 9.3
AY354539-1|AAQ92977.1| 1399|Homo sapiens IRIS protein. 28 9.3
AY273801-1|AAP12647.1| 1863|Homo sapiens breast cancer 1, early ... 28 9.3
>M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal
protein mRNA, complete cds. ).
Length = 106
Score = 109 bits (263), Expect = 2e-24
Identities = 61/106 (57%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein.
Length = 106
Score = 109 bits (263), Expect = 2e-24
Identities = 61/106 (57%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 109 bits (263), Expect = 2e-24
Identities = 61/106 (57%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 109 bits (263), Expect = 2e-24
Identities = 61/106 (57%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 109 bits (263), Expect = 2e-24
Identities = 61/106 (57%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 109 bits (263), Expect = 2e-24
Identities = 61/106 (57%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 109 bits (263), Expect = 2e-24
Identities = 61/106 (57%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protein
protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting
protein 15 protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing protein
6 protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 108 bits (260), Expect = 5e-24
Identities = 60/106 (56%), Positives = 69/106 (65%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXXX 146
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KP F
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 145 XXXXKIVXR-T*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R V R + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein
protein.
Length = 25
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = -2
Query: 82 VALKRCKHFELGGDKKRKGQMIQF 11
+ +KR KHF+LGGDKKRKGQ+IQF
Sbjct: 2 LTIKRYKHFKLGGDKKRKGQVIQF 25
>AC006530-6|AAD30184.1| 391|Homo sapiens hypothetical protein
protein.
Length = 391
Score = 33.1 bits (72), Expect = 0.33
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 374 GRCSLTFVDIVPNELKNGERT--KTAQDVLQKM*MPQSTQGITVQKVQGKARCPG 216
G+ L FV+ NEL+ G T K+ ++LQ Q T +TVQKV C G
Sbjct: 248 GKVPLCFVEREANELRRGRSTVTKSIVELLQTTGGIQGTLPLTVQKVLASQACHG 302
>BC113477-1|AAI13478.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>BC113475-1|AAI13476.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AL512665-2|CAI16955.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AL512665-1|CAI16956.1| 655|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 655
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AL450997-2|CAI19097.1| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AL450997-1|CAI19096.1| 655|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 655
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AL049557-3|CAB55687.2| 636|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AL049557-2|CAI22711.1| 655|Homo sapiens potassium voltage-gated
channel, Shal-related subfamily, member 3 protein.
Length = 655
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AF205857-1|AAF20925.1| 655|Homo sapiens potassium ionic channel
Kv4.3 long isoform protein.
Length = 655
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AF205856-1|AAF20924.1| 636|Homo sapiens potassium ionic channel
Kv4.3 short isoform protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AF187964-1|AAF01045.1| 636|Homo sapiens voltage gated potassium
channel Kv4.3 short splice variant protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AF187963-1|AAF01044.1| 655|Homo sapiens voltage gated potassium
channel Kv4.3 long splice variant protein.
Length = 655
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AF166011-2|AAF68178.1| 636|Homo sapiens voltage-gated potassium
channel Kv4.3 short variant protein.
Length = 636
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>AF166011-1|AAF68177.1| 655|Homo sapiens voltage-gated potassium
channel Kv4.3 long variant protein.
Length = 655
Score = 29.9 bits (64), Expect = 3.1
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 72 FNATCVSHLXNQHTQVRXTIFLVVFAFFLKLGLDXXXXXX----XLRS*RLLPWAACLSL 239
F T N HT +F V FF+ + + + + LP S+
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGTVPGSKELPCGERYSV 224
Query: 240 DFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEFVR 341
F DT C + + ++Y+LR F + + F+R
Sbjct: 225 AFFCLDTACVM--IFTVEYLLRLFAAPSRYRFIR 256
>U64805-1|AAC00049.1| 759|Homo sapiens Brca1-delta11b protein.
Length = 759
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>U14680-1|AAA73985.1| 1863|Homo sapiens breast and ovarian cancer
susceptibility protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>L78833-1|AAC37594.1| 1863|Homo sapiens BRCA1 protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ478408-3|ABF14462.1| 1822|Homo sapiens early onset breast cancer
1 protein.
Length = 1822
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190457-3|ABA29229.1| 1822|Homo sapiens breast cancer 1 early
onset protein.
Length = 1822
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190456-3|ABA29226.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190455-3|ABA29223.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190454-3|ABA29220.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190453-3|ABA29217.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190452-3|ABA29214.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190451-3|ABA29211.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>DQ190450-3|ABA29208.1| 1863|Homo sapiens breast cancer 1 early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>BC106745-1|AAI06746.1| 473|Homo sapiens BRCA1 protein protein.
Length = 473
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>BC085615-1|AAH85615.1| 624|Homo sapiens BRCA1 protein protein.
Length = 624
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>BC072418-1|AAH72418.1| 699|Homo sapiens BRCA1 protein protein.
Length = 699
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>BC030969-1|AAH30969.1| 657|Homo sapiens BRCA1 protein protein.
Length = 657
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>AY751490-1|AAU93634.1| 1841|Homo sapiens breast and ovarian cancer
susceptibility protein protein.
Length = 1841
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>AY354539-1|AAQ92977.1| 1399|Homo sapiens IRIS protein.
Length = 1399
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
>AY273801-1|AAP12647.1| 1863|Homo sapiens breast cancer 1, early
onset protein.
Length = 1863
Score = 28.3 bits (60), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 21 ICPFLFLSPPSSKCLHLFNATCVSHLXNQ 107
IC L P S+KC H+F C+ L NQ
Sbjct: 26 ICLELIKEPVSTKCDHIFCKFCMLKLLNQ 54
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,665,645
Number of Sequences: 237096
Number of extensions: 891858
Number of successful extensions: 2338
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 2270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2321
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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