Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F24
(389 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 103 4e-23
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 103 4e-23
Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical ... 27 4.7
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 27 6.2
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.2
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.2
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 26 8.2
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 26 8.2
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 103 bits (247), Expect = 4e-23
Identities = 56/106 (52%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXX 149
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KP F
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 148 XXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R C + + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRM-ECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 103 bits (247), Expect = 4e-23
Identities = 56/106 (52%), Positives = 66/106 (62%), Gaps = 1/106 (0%)
Frame = -2
Query: 325 MVNVPKQRRTYXXXXXXXXXXXV-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPSFXXX 149
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KP F
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 148 XXXXXKIVXRT*VC*LXR*ETQVALKRCKHFELGGDKKRKGQMIQF 11
KIV R C + + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRM-ECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical
protein T15D6.5 protein.
Length = 376
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -3
Query: 315 YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPASKRRQKPL 136
Y +AGRT + + + KS R LP++++ + +V+ P S R+K L
Sbjct: 86 YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145
Query: 135 RK 130
RK
Sbjct: 146 RK 147
>AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical
protein D1079.1 protein.
Length = 113
Score = 27.1 bits (57), Expect = 4.7
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 223 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSFGTISTNV 360
QR++P+ TF + +LC +YI C S +V + FL +F + +NV
Sbjct: 30 QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF-VMDSNV 77
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 175 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 315
+H V+ NV+ P Q P V+ VLC I C S + +
Sbjct: 38 NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
protein F10C2.4 protein.
Length = 1081
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 261 RYHSTKSPRKGTLPRV-EDVMIVNSR 187
+Y +TKS R+G LP + ED++ R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 237 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 332
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 237 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 332
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 40 CHHQAQSACISSMQPVS 90
C Q QS C+ QPVS
Sbjct: 137 CQQQCQSTCVQQQQPVS 153
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 40 CHHQAQSACISSMQPVS 90
C Q QS C+ QPVS
Sbjct: 137 CQQQCQSTCVQQQQPVS 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,279
Number of Sequences: 27780
Number of extensions: 142870
Number of successful extensions: 494
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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