Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F22
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 29 0.58
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 29 0.58
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi... 26 3.1
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.1
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa... 25 5.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 7.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 25 7.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 9.5
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 9.5
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 25 9.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.5
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 9.5
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 28.7 bits (61), Expect = 0.58
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 319 FYSRNRWVEYSDKYYLNYDGSQVPAEW 239
F + WV Y+D LNYDGS W
Sbjct: 139 FEKKAAWVLYADIICLNYDGSAFDYAW 165
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.58
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -2
Query: 418 ASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVP-AE 242
+S+ L + VKD + D G+ +N + S N Y +K+ YD +P +
Sbjct: 47 SSMLHLSKGLTVKDVRIFFHDSIGSTLLKNRKKLNSENELPNYGEKFTHKYDNQDMPDSV 106
Query: 241 WFGWLHYKTDLPP 203
W ++ T P
Sbjct: 107 WLAKVNGMTKSDP 119
>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
protease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 298
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 168 WRTTPKIFLARPPNMCRTVRPDPKWKP 88
W+ K F RP ++P P WKP
Sbjct: 11 WKFGQKRFYYRPWIRIENIKPTPLWKP 37
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = -2
Query: 358 DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAE 242
DKY Y YS N W+++ K+ + + P +
Sbjct: 565 DKYNKDIYIGSTVCYSPNEWLDFFSKFQQPREALKFPED 603
>SPACUNK4.17 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 361 EDKYGNKYYENPRFFYSRNRWVEYSDKY 278
E +Y + Y N R FYS + ++EY D +
Sbjct: 90 ETEYASSY-ANTREFYSADEYLEYLDSH 116
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 120 RTVRPDPKWKPGSRNA 73
R+VR PK+KPG+R +
Sbjct: 110 RSVRSKPKYKPGTRRS 125
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 385 VKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSDKYY 275
V G+++ + +K ENP F+Y R EY D +Y
Sbjct: 357 VSYGLMMNLVRDFSKNLENPNFYYER----EYVDSFY 389
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -2
Query: 289 SDKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQ-YVPYS 113
S+ + +N +G +V + W + D H D + + H E L T + Y Y
Sbjct: 302 SNTFVVNNEGKRVRGRRYPWGVVEVDNEEHSDFPKLREMLIRTHLEELKEQTNKLYEAYR 361
Query: 112 TTR 104
T R
Sbjct: 362 TER 364
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 304 RWVEYSDKYYLNYDGSQVPAEWFGWLHYKTD 212
+WV+YS+KY L Y Q+ E G +H+ D
Sbjct: 496 KWVDYSNKYGLGY---QLSDESVG-VHFNDD 522
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 257 TSIIVQVILVRVLDPSVPAVKETWVLIVFVTIFVFSN*NTV 379
TS+ V+++ ++ DP + VK+ W + F TI + NTV
Sbjct: 1530 TSVFVELLRLKDSDPLLSVVKDNW--LFFQTILT-NEINTV 1567
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 184 DDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCP 288
++SDP A+ C V TI P HS+ + P
Sbjct: 28 NESDPKAKPQWECPVRGLTIPPPPSVDHSAPPSGP 62
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 279 YLSEYSTHLFLL*KKRGFS*YLLPY 353
YL+ T+LF L ++R YL+PY
Sbjct: 295 YLAPQLTNLFSLIRERSLLDYLIPY 319
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 50 NLFL-NTVFAFRLPGFHFGSGRTVRHILGGRAR 145
+LF+ N +FAF LP + + R+++H++ R
Sbjct: 257 SLFVWNVLFAFILPRLYVCNERSIKHLVASLER 289
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 436 QNGGIRASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWV 296
+ GG + KL R+D+ KD V + K G K + + RWV
Sbjct: 1825 KKGGAKGWFSKLLRRDESKDQPTVYKAKLGEK--SHLHYDKELKRWV 1869
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 412 LYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYSD 284
L ++RQ D + ++ E + G E+ R F NR +EY D
Sbjct: 487 LTHVFRQKDEEFVKMLNELRLGKLSDESVRKFKVLNRTIEYED 529
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,646
Number of Sequences: 5004
Number of extensions: 56870
Number of successful extensions: 181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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