Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F20
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   2.2  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   6.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   6.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   9.0  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   9.0  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 501 INI-SLSIKYMYFLHGYQVSSQSDAWFSSYNGTSVKTTVDLHIST 370
           +NI S  I ++ +L+GY + + S   FSS         +D+HIS+
Sbjct: 343 LNINSQVIAFLLYLYGYFLPAPSTPGFSSNKPPLTMLQLDIHISS 387


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 366 YLY*YVNLQW--FLRMFRYNY*TMHPIDLKLGIHVENTCT*WIG*YLY 503
           Y+  + +L W  FL   +  Y   HP+DL L   +   C  ++G Y++
Sbjct: 263 YMLSFGDLVWVPFLYSLQARYLAFHPVDLGLVKTLAILCLQFLGYYIF 310


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 187 VYSKAKKCT*SCIHEILKSIYSIDSRDSFLHQACIGSFTSSN 312
           V ++ K C   C   + KS+ SI    S +H  C   + SSN
Sbjct: 858 VITREKTCL-FCHKRLGKSVISIFPDGSVVHYGCAKKYVSSN 898


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 134 SNSDLYKYLKESVTNSYLFTQKQKNVLSLVYTKFSSRYIRSIPGTVFCIK 283
           S+ DL+  L + V N +LF +K   + + + +   SR   SIP  V  ++
Sbjct: 200 SSDDLF--LNDRVINLFLFYEKFSYLFTHLLSAIKSRDALSIPSLVLSLQ 247


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 285 RLMQKTVPGIDRIYRLENFVYTRLSTF 205
           R M ++VP  D IY+L+N +   L+ F
Sbjct: 515 RHMDESVPFDDLIYKLQNILVRELTDF 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,965
Number of Sequences: 5004
Number of extensions: 49321
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)