Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F20
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780...    29   3.0  
03_01_0206 - 1625020-1625619,1625722-1625931,1626054-1626094,162...    29   3.0  
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019...    27   9.2  

>06_03_0083 +
           16374830-16374922,16375917-16375974,16377893-16378089,
           16378176-16378292,16378437-16378497,16378603-16378691,
           16378808-16378882,16378992-16379080,16379203-16379252,
           16379539-16379699,16380004-16380132,16380548-16380928
          Length = 499

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 83  NFLIQRLMFVQGHLKIRSNSDLYKYLKESVTNSY 184
           ++L  R  F+  HL   S  D +KY+K S+ + +
Sbjct: 220 DYLTMRQGFINAHLSQNSKFDFHKYIKRSLEDDF 253


>03_01_0206 -
           1625020-1625619,1625722-1625931,1626054-1626094,
           1626185-1626234,1626345-1626433,1626534-1626608,
           1626721-1626806,1626896-1626956,1627090-1627206,
           1627308-1627549,1627983-1628040,1628162-1628284
          Length = 583

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 83  NFLIQRLMFVQGHLKIRSNSDLYKYLKESVTNSY 184
           ++L  R  F+  HL   S  D +KY+K S+ + +
Sbjct: 244 DYLTMRQGFINAHLSQNSKFDFHKYIKRSLEDDF 277


>02_02_0574 -
           11701359-11701460,11701469-11701570,11701725-11701922,
           11702090-11704052,11705312-11706126
          Length = 1059

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 453 QVSSQSDAWFSSYNGTSVKTTVDLHISTDINLY 355
           Q+S  + AW  SY  T + +  +LH   D+ ++
Sbjct: 693 QISESTGAWHDSYENTLIDSLCNLHKICDLYIH 725


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,886,125
Number of Sequences: 37544
Number of extensions: 254035
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)