Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_F20
(626 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064636-1|AAH64636.1| 664|Homo sapiens ring finger protein 139... 30 5.8
BC028058-1|AAH28058.1| 378|Homo sapiens B3GNT5 protein protein. 30 5.8
BC021571-1|AAH21571.1| 664|Homo sapiens ring finger protein 139... 30 5.8
AJ304505-1|CAC83093.1| 376|Homo sapiens Gal-beta1-3 GlcNAc-tran... 30 5.8
AF368169-1|AAK53403.1| 378|Homo sapiens beta 1,3 N-acetyglucosa... 30 5.8
AF064801-1|AAC39930.1| 664|Homo sapiens multiple membrane spann... 30 5.8
AB209517-1|BAD92754.1| 365|Homo sapiens beta-1,3-N-acetylglucos... 30 5.8
AB045278-1|BAB40940.1| 378|Homo sapiens beta1,3-N-acetylglucosa... 30 5.8
>BC064636-1|AAH64636.1| 664|Homo sapiens ring finger protein 139
protein.
Length = 664
Score = 30.3 bits (65), Expect = 5.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 606 LDCFKPILXVLARFAGHLKLTLLFXVIIIRESDTHINISLSIKYMYFLHGY 454
LD P++ ++ H++ TLLF +I +T +++ +K+ Y+ Y
Sbjct: 157 LDLLVPVIGLITELPLHIRETLLFTSSLILTLNTVFVLAVKLKWFYYSTRY 207
>BC028058-1|AAH28058.1| 378|Homo sapiens B3GNT5 protein protein.
Length = 378
Score = 30.3 bits (65), Expect = 5.8
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 74 FLSNFLIQRLMF---VQGHLKIRSNSDLYKYLKESVTNSYLFTQKQKNVLSLVYTKFSSR 244
F + FL + F + H+ S Y+YL NSY F + LSL +T R
Sbjct: 20 FATCFLASLMFFWEPIDNHIVSHMKSYSYRYL----INSYDFVN---DTLSLKHTSAGPR 72
Query: 245 YIRSIPGTVFCIKRA*VLLLVVINTRP-NYNRHS 343
Y I C + VLLL+ + T P NY+R S
Sbjct: 73 YQYLINHKEKC-QAQDVLLLLFVKTAPENYDRRS 105
>BC021571-1|AAH21571.1| 664|Homo sapiens ring finger protein 139
protein.
Length = 664
Score = 30.3 bits (65), Expect = 5.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 606 LDCFKPILXVLARFAGHLKLTLLFXVIIIRESDTHINISLSIKYMYFLHGY 454
LD P++ ++ H++ TLLF +I +T +++ +K+ Y+ Y
Sbjct: 157 LDLLVPVIGLITELPLHIRETLLFTSSLILTLNTVFVLAVKLKWFYYSTRY 207
>AJ304505-1|CAC83093.1| 376|Homo sapiens Gal-beta1-3
GlcNAc-transferase protein.
Length = 376
Score = 30.3 bits (65), Expect = 5.8
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 74 FLSNFLIQRLMF---VQGHLKIRSNSDLYKYLKESVTNSYLFTQKQKNVLSLVYTKFSSR 244
F + FL + F + H+ S Y+YL NSY F + LSL +T R
Sbjct: 18 FATCFLASLMFFWEPIDNHIVSHMKSYSYRYL----INSYDFVN---DTLSLKHTSAGPR 70
Query: 245 YIRSIPGTVFCIKRA*VLLLVVINTRP-NYNRHS 343
Y I C + VLLL+ + T P NY+R S
Sbjct: 71 YQYLINHKEKC-QAQDVLLLLFVKTAPENYDRRS 103
>AF368169-1|AAK53403.1| 378|Homo sapiens beta 1,3
N-acetyglucosaminyltransferase Lc3 synthase protein.
Length = 378
Score = 30.3 bits (65), Expect = 5.8
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 74 FLSNFLIQRLMF---VQGHLKIRSNSDLYKYLKESVTNSYLFTQKQKNVLSLVYTKFSSR 244
F + FL + F + H+ S Y+YL NSY F + LSL +T R
Sbjct: 20 FATCFLASLMFFWEPIDNHIVSHMKSYSYRYL----INSYDFVN---DTLSLKHTSAGPR 72
Query: 245 YIRSIPGTVFCIKRA*VLLLVVINTRP-NYNRHS 343
Y I C + VLLL+ + T P NY+R S
Sbjct: 73 YQYLINHKEKC-QAQDVLLLLFVKTAPENYDRRS 105
>AF064801-1|AAC39930.1| 664|Homo sapiens multiple membrane spanning
receptor TRC8 protein.
Length = 664
Score = 30.3 bits (65), Expect = 5.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 606 LDCFKPILXVLARFAGHLKLTLLFXVIIIRESDTHINISLSIKYMYFLHGY 454
LD P++ ++ H++ TLLF +I +T +++ +K+ Y+ Y
Sbjct: 157 LDLLVPVIGLITELPLHIRETLLFTSSLILTLNTVFVLAVKLKWFYYSTRY 207
>AB209517-1|BAD92754.1| 365|Homo sapiens
beta-1,3-N-acetylglucosaminyltransferase bGnT-5 variant
protein.
Length = 365
Score = 30.3 bits (65), Expect = 5.8
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 74 FLSNFLIQRLMF---VQGHLKIRSNSDLYKYLKESVTNSYLFTQKQKNVLSLVYTKFSSR 244
F + FL + F + H+ S Y+YL NSY F + LSL +T R
Sbjct: 22 FATCFLASLMFFWEPIDNHIVSHMKSYSYRYL----INSYDFVN---DTLSLKHTSAGPR 74
Query: 245 YIRSIPGTVFCIKRA*VLLLVVINTRP-NYNRHS 343
Y I C + VLLL+ + T P NY+R S
Sbjct: 75 YQYLINHKEKC-QAQDVLLLLFVKTAPENYDRRS 107
>AB045278-1|BAB40940.1| 378|Homo sapiens
beta1,3-N-acetylglucosaminyltransferase 5 protein.
Length = 378
Score = 30.3 bits (65), Expect = 5.8
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = +2
Query: 74 FLSNFLIQRLMF---VQGHLKIRSNSDLYKYLKESVTNSYLFTQKQKNVLSLVYTKFSSR 244
F + FL + F + H+ S Y+YL NSY F + LSL +T R
Sbjct: 20 FATCFLASLMFFWEPIDNHIVSHMKSYSYRYL----INSYDFVN---DTLSLKHTSAGPR 72
Query: 245 YIRSIPGTVFCIKRA*VLLLVVINTRP-NYNRHS 343
Y I C + VLLL+ + T P NY+R S
Sbjct: 73 YQYLINHKEKC-QAQDVLLLLFVKTAPENYDRRS 105
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,032,229
Number of Sequences: 237096
Number of extensions: 1557800
Number of successful extensions: 2264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2264
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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