Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_F13
         (572 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.4  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.4  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 365 RLKLSTMLSEGRITPKPIDVQVVSHN 288
           R+K    + EG I P+PI   + + N
Sbjct: 305 RMKQKKRMKEGLIPPEPISASLSTSN 330


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 365 RLKLSTMLSEGRITPKPIDVQVVSHN 288
           R+K    + EG I P+PI   + + N
Sbjct: 94  RMKQKKRMKEGLIPPEPISASLSTSN 119


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 365 RLKLSTMLSEGRITPKPIDVQVVSHN 288
           R+K    + EG I P+PI   + + N
Sbjct: 94  RMKQKKRMKEGLIPPEPISASLSTSN 119


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 87  LFYTTV*VDIISNLILEGCLC 149
           +FY    +D++   +L  C+C
Sbjct: 185 IFYILPDLDVVKGAMLTNCIC 205


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 87  LFYTTV*VDIISNLILEGCLC 149
           +FY    +D++   +L  C+C
Sbjct: 185 IFYILPDLDVVKGAMLTNCIC 205


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 87  LFYTTV*VDIISNLILEGCLC 149
           +FY    +D++   +L  C+C
Sbjct: 185 IFYILPDLDVVKGAMLTNCIC 205


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 87  LFYTTV*VDIISNLILEGCLC 149
           +FY    +D++   +L  C+C
Sbjct: 185 IFYILPDLDVVKGAMLTNCIC 205


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 568  DLRFSSILNFXMLISLYL*MRWLM 497
            DLR   +  F ML SLY+ + +L+
Sbjct: 1220 DLRDKMVFTFLMLNSLYVIVIFLL 1243


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 568  DLRFSSILNFXMLISLYL*MRWLM 497
            DLR   +  F ML SLY+ + +L+
Sbjct: 1220 DLRDKMVFTFLMLNSLYVIVIFLL 1243


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 466 DEDCMETLC 440
           DEDC ET C
Sbjct: 24  DEDCTETSC 32


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 406 PKSRNIVEPPDN 441
           P SRN  EP DN
Sbjct: 262 PASRNAPEPADN 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,821
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)